Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M5J22_RS16930 Genome accession   NZ_CP097326
Coordinates   3453071..3453760 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GUCC45     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3448071..3458760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5J22_RS16895 (M5J22_16895) - 3448269..3448751 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M5J22_RS16900 (M5J22_16900) flgM 3448766..3449032 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M5J22_RS16905 (M5J22_16905) - 3449102..3449521 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  M5J22_RS16910 (M5J22_16910) comFC 3449595..3450284 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  M5J22_RS16915 (M5J22_16915) - 3450290..3450574 (-) 285 WP_003151389.1 competence protein ComFB -
  M5J22_RS16920 (M5J22_16920) comFA 3450632..3452017 (-) 1386 WP_201489091.1 DEAD/DEAH box helicase Machinery gene
  M5J22_RS16925 (M5J22_16925) - 3452125..3452973 (-) 849 WP_015418336.1 DegV family protein -
  M5J22_RS16930 (M5J22_16930) degU 3453071..3453760 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M5J22_RS16935 (M5J22_16935) degS 3453837..3455000 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M5J22_RS16940 (M5J22_16940) - 3455223..3455870 (+) 648 WP_007407485.1 YigZ family protein -
  M5J22_RS16945 (M5J22_16945) - 3455875..3457089 (+) 1215 WP_015418337.1 LCP family protein -
  M5J22_RS16950 (M5J22_16950) - 3457179..3458255 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=688495 M5J22_RS16930 WP_003219701.1 3453071..3453760(-) (degU) [Bacillus velezensis strain GUCC45]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=688495 M5J22_RS16930 WP_003219701.1 3453071..3453760(-) (degU) [Bacillus velezensis strain GUCC45]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1