Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M5J22_RS16920 Genome accession   NZ_CP097326
Coordinates   3450632..3452017 (-) Length   461 a.a.
NCBI ID   WP_201489091.1    Uniprot ID   -
Organism   Bacillus velezensis strain GUCC45     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3445632..3457017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5J22_RS16885 (M5J22_16885) flgL 3445807..3446724 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  M5J22_RS16890 (M5J22_16890) flgK 3446736..3448253 (-) 1518 WP_201489090.1 flagellar hook-associated protein FlgK -
  M5J22_RS16895 (M5J22_16895) - 3448269..3448751 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M5J22_RS16900 (M5J22_16900) flgM 3448766..3449032 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M5J22_RS16905 (M5J22_16905) - 3449102..3449521 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  M5J22_RS16910 (M5J22_16910) comFC 3449595..3450284 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  M5J22_RS16915 (M5J22_16915) - 3450290..3450574 (-) 285 WP_003151389.1 competence protein ComFB -
  M5J22_RS16920 (M5J22_16920) comFA 3450632..3452017 (-) 1386 WP_201489091.1 DEAD/DEAH box helicase Machinery gene
  M5J22_RS16925 (M5J22_16925) - 3452125..3452973 (-) 849 WP_015418336.1 DegV family protein -
  M5J22_RS16930 (M5J22_16930) degU 3453071..3453760 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M5J22_RS16935 (M5J22_16935) degS 3453837..3455000 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M5J22_RS16940 (M5J22_16940) - 3455223..3455870 (+) 648 WP_007407485.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52520.89 Da        Isoelectric Point: 10.1458

>NTDB_id=688494 M5J22_RS16920 WP_201489091.1 3450632..3452017(-) (comFA) [Bacillus velezensis strain GUCC45]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=688494 M5J22_RS16920 WP_201489091.1 3450632..3452017(-) (comFA) [Bacillus velezensis strain GUCC45]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCTTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGAATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629