Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS089_RS13305 Genome accession   NZ_CP113049
Coordinates   2685944..2686339 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain Ahri     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2680944..2691339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS089_RS13275 - 2680964..2681197 (+) 234 WP_000384520.1 DUF1146 family protein -
  OS089_RS13280 murA 2681308..2682573 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS089_RS13285 fabZ 2682607..2683047 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS089_RS13290 - 2683104..2683544 (-) 441 WP_000846746.1 YwpF-like family protein -
  OS089_RS13295 istA 2683755..2685047 (+) 1293 WP_000777467.1 IS21 family transposase -
  OS089_RS13300 istB 2685040..2685801 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  OS089_RS13305 ssb 2685944..2686339 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS089_RS13310 sceD 2686728..2687423 (+) 696 WP_000751997.1 lytic transglycosylase SceD -
  OS089_RS13315 tenA 2687811..2688500 (+) 690 WP_000396067.1 thiaminase II -
  OS089_RS13320 thiD 2688493..2689323 (+) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS089_RS13325 thiM 2689307..2690098 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  OS089_RS13330 thiE 2690100..2690741 (+) 642 WP_000483147.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=688485 OS089_RS13305 WP_000932694.1 2685944..2686339(+) (ssb) [Staphylococcus aureus strain Ahri]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=688485 OS089_RS13305 WP_000932694.1 2685944..2686339(+) (ssb) [Staphylococcus aureus strain Ahri]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992