Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M2M59_RS16345 Genome accession   NZ_CP097314
Coordinates   3229982..3230536 (-) Length   184 a.a.
NCBI ID   WP_066791172.1    Uniprot ID   -
Organism   Rummeliibacillus sp. G93     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3224982..3235536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M59_RS16325 (M2M59_16325) rplI 3226025..3226474 (-) 450 WP_066791164.1 50S ribosomal protein L9 -
  M2M59_RS16330 (M2M59_16330) - 3226471..3228447 (-) 1977 WP_147197609.1 DHH family phosphoesterase -
  M2M59_RS16335 (M2M59_16335) - 3228461..3229402 (-) 942 WP_249775118.1 YybS family protein -
  M2M59_RS16340 (M2M59_16340) rpsR 3229694..3229930 (-) 237 WP_066791170.1 30S ribosomal protein S18 -
  M2M59_RS16345 (M2M59_16345) ssbA 3229982..3230536 (-) 555 WP_066791172.1 single-stranded DNA-binding protein Machinery gene
  M2M59_RS16350 (M2M59_16350) rpsF 3230578..3230868 (-) 291 WP_147197613.1 30S ribosomal protein S6 -
  M2M59_RS16355 (M2M59_16355) ychF 3231077..3232177 (-) 1101 WP_147197615.1 redox-regulated ATPase YchF -
  M2M59_RS16360 (M2M59_16360) - 3232254..3232448 (-) 195 WP_221298017.1 DUF951 domain-containing protein -
  M2M59_RS16365 (M2M59_16365) - 3232472..3233371 (-) 900 WP_223823615.1 mechanosensitive ion channel family protein -
  M2M59_RS16370 (M2M59_16370) yyaC 3233445..3234041 (+) 597 WP_249775119.1 spore protease YyaC -
  M2M59_RS16375 (M2M59_16375) - 3234000..3234704 (-) 705 WP_249775120.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20183.02 Da        Isoelectric Point: 5.2492

>NTDB_id=688385 M2M59_RS16345 WP_066791172.1 3229982..3230536(-) (ssbA) [Rummeliibacillus sp. G93]
MINRVVLVGRLTKDPELRYTPNGVAVARFTLAVNRTFSNQQGEKQADFINCVVWRKQAENTANFLHKGSLAGIEGRIQTG
SFEGQDGKRVYTTEVVADSVQFLEPRSATGDRPAPSQSYGGQPSYGGGSQYGSASQEGNYQQPSYQQNHSPNQQNYTRVD
EDPFAPMNNNGGGKVDVTEDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=688385 M2M59_RS16345 WP_066791172.1 3229982..3230536(-) (ssbA) [Rummeliibacillus sp. G93]
ATGATTAACCGCGTCGTATTAGTCGGAAGGCTAACAAAAGATCCGGAACTTCGCTACACACCAAATGGTGTAGCAGTTGC
TCGTTTTACATTAGCTGTGAATAGAACATTTTCTAATCAACAAGGTGAAAAGCAAGCCGACTTCATCAACTGTGTTGTTT
GGCGCAAACAAGCTGAAAATACTGCAAACTTCTTGCATAAAGGAAGCCTTGCAGGGATTGAAGGCCGCATCCAAACAGGC
AGTTTTGAAGGTCAAGACGGCAAGCGTGTATACACAACAGAAGTGGTGGCAGATAGTGTCCAATTCTTAGAACCACGAAG
TGCAACTGGAGATCGTCCGGCACCAAGCCAATCGTATGGCGGCCAACCGTCTTACGGTGGTGGCAGCCAATATGGCAGTG
CTTCTCAAGAAGGGAATTATCAACAGCCATCATATCAACAGAATCACTCACCTAATCAGCAAAACTATACACGTGTAGAT
GAAGATCCATTTGCGCCAATGAATAACAATGGCGGAGGGAAAGTCGACGTAACAGAAGACGATCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.08

100

0.56
  ssb Latilactobacillus sakei subsp. sakei 23K

48.925

100

0.495