Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   OS087_RS01830 Genome accession   NZ_CP113047
Coordinates   317193..317906 (+) Length   237 a.a.
NCBI ID   WP_031768797.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sett     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 312193..322906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS087_RS01770 ssb 312499..312927 (-) 429 WP_000934783.1 single-stranded DNA-binding protein -
  OS087_RS01775 - 312927..313565 (-) 639 WP_001043071.1 ERF family protein -
  OS087_RS01780 - 313565..314044 (-) 480 WP_000002516.1 siphovirus Gp157 family protein -
  OS087_RS01785 - 314059..314319 (-) 261 WP_031807830.1 DUF1108 family protein -
  OS087_RS01790 - 314411..314572 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  OS087_RS01795 - 314569..314889 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  OS087_RS01800 - 314948..315580 (+) 633 WP_000275058.1 hypothetical protein -
  OS087_RS01805 - 315595..315735 (-) 141 WP_000939496.1 hypothetical protein -
  OS087_RS01810 - 315766..315964 (-) 199 Protein_324 hypothetical protein -
  OS087_RS01815 - 315977..316774 (-) 798 WP_267830486.1 phage antirepressor -
  OS087_RS01820 - 316790..317059 (-) 270 WP_267830487.1 helix-turn-helix transcriptional regulator -
  OS087_RS01825 - 317056..317230 (-) 175 Protein_327 transcriptional regulator -
  OS087_RS01830 irvR 317193..317906 (+) 714 WP_031768797.1 XRE family transcriptional regulator Regulator
  OS087_RS01835 - 317918..318064 (+) 147 WP_001049401.1 hypothetical protein -
  OS087_RS01840 - 318061..318246 (+) 186 WP_000109193.1 hypothetical protein -
  OS087_RS01845 - 318302..318886 (+) 585 WP_031901045.1 hypothetical protein -
  OS087_RS01850 - 319116..319298 (+) 183 WP_000694772.1 hypothetical protein -
  OS087_RS01855 - 319398..320381 (+) 984 WP_031901044.1 glycosyltransferase family 2 protein -
  OS087_RS01860 - 320392..320634 (+) 243 WP_031901043.1 hypothetical protein -
  OS087_RS01865 - 320697..321734 (+) 1038 WP_000857185.1 tyrosine-type recombinase/integrase -
  OS087_RS01870 sph 321791..322615 (+) 825 Protein_336 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27030.67 Da        Isoelectric Point: 5.4243

>NTDB_id=688325 OS087_RS01830 WP_031768797.1 317193..317906(+) (irvR) [Staphylococcus aureus strain Sett]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQKNVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKEYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=688325 OS087_RS01830 WP_031768797.1 317193..317906(+) (irvR) [Staphylococcus aureus strain Sett]
ATGAACAAAGAAAGAAATATAATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGAGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAAAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGACGGTGAAATTATATTCGTAGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGAATACGATGATCTACACTTTTACAGGAACGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-63)

Peptidase S24-like (Peptidase_S24)

(127-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.571

100

0.397