Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   M4S28_RS14665 Genome accession   NZ_CP097293
Coordinates   3292932..3293537 (+) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio sp. J383     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3287932..3298537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS14645 (M4S28_14645) - 3288168..3289085 (-) 918 WP_017079966.1 ABC transporter ATP-binding protein -
  M4S28_RS14650 (M4S28_14650) - 3289408..3291039 (-) 1632 WP_029222729.1 SulP family inorganic anion transporter -
  M4S28_RS14655 (M4S28_14655) can 3291327..3291986 (+) 660 WP_004735453.1 carbonate dehydratase -
  M4S28_RS14660 (M4S28_14660) hpt 3292064..3292594 (-) 531 WP_004735452.1 hypoxanthine phosphoribosyltransferase -
  M4S28_RS14665 (M4S28_14665) opaR 3292932..3293537 (+) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  M4S28_RS14670 (M4S28_14670) lpdA 3293839..3295266 (-) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  M4S28_RS14675 (M4S28_14675) aceF 3295509..3297398 (-) 1890 WP_249632022.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=688325 M4S28_RS14665 WP_017079965.1 3292932..3293537(+) (opaR) [Vibrio sp. J383]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=688325 M4S28_RS14665 WP_017079965.1 3292932..3293537(+) (opaR) [Vibrio sp. J383]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATTGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACGGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATCGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726