Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   M4S28_RS12490 Genome accession   NZ_CP097293
Coordinates   2787943..2789331 (-) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio sp. J383     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2782943..2794331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS12455 (M4S28_12455) moaE 2783458..2783931 (-) 474 WP_004734024.1 molybdopterin synthase catalytic subunit MoaE -
  M4S28_RS12460 (M4S28_12460) moaD 2783934..2784179 (-) 246 WP_004734025.1 molybdopterin synthase sulfur carrier subunit -
  M4S28_RS12465 (M4S28_12465) moaC 2784176..2784655 (-) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  M4S28_RS12470 (M4S28_12470) moaB 2784668..2785180 (-) 513 WP_017084034.1 molybdenum cofactor biosynthesis protein B -
  M4S28_RS12475 (M4S28_12475) moaA 2785271..2786260 (-) 990 WP_026012219.1 GTP 3',8-cyclase MoaA -
  M4S28_RS12480 (M4S28_12480) - 2786596..2787483 (+) 888 WP_017063463.1 YvcK family protein -
  M4S28_RS12485 (M4S28_12485) luxU 2787574..2787918 (-) 345 WP_004734030.1 quorum-sensing phosphorelay protein LuxU -
  M4S28_RS12490 (M4S28_12490) luxO 2787943..2789331 (-) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  M4S28_RS12495 (M4S28_12495) uvrB 2789634..2791664 (-) 2031 WP_017084035.1 excinuclease ABC subunit UvrB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=688323 M4S28_RS12490 WP_004734031.1 2787943..2789331(-) (luxO) [Vibrio sp. J383]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=688323 M4S28_RS12490 WP_004734031.1 2787943..2789331(-) (luxO) [Vibrio sp. J383]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGACATGACCGGTATGGACGTGCTATTTGCTGTAAAACAAAAGTAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGTTCTATCGATACCGCCGTAGAAGCTATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAACTTAAAA
ACAGCTCGGAACATCCGGGAAACCAAAACTATCAAGGTTTCATTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCAGCATCGAGTAAAGCCAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
TATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATTGCGATTAACTGTGCGGCTATCCCTAAAGATCTAATTGAAA
GTGAGCTATTTGGCCACGTTAAAGGCGCCTTTACCGGTGCTGCAACTGATCGTCAAGGTGCCGCTGAACTTGCTGATGGC
GGAACACTATTCCTTGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACCAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTTGGCTCTTCGAAGATGAAGAGTGTCGATGTTCGTTTCGTATGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACCTGCCGCCATTGCGCGAG
CGCGGTGAAGATGTCATCGAGATTGCGTACTCGTTACTAGGTTACATGTCGGTTGAGGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCATTGAACCAACCGATTGAAAACAGCTTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATAAAAGCGTGTGACGGCAACATTCCCCGCGCGGCCGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37