Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   M4X66_RS00760 Genome accession   NZ_CP097286
Coordinates   175850..177442 (-) Length   530 a.a.
NCBI ID   WP_249583468.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain JACO-C-5     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 170850..182442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4X66_RS00745 - 172715..173116 (+) 402 WP_122424369.1 type IV pilin protein -
  M4X66_RS00750 thiO 173144..174256 (+) 1113 WP_249583467.1 glycine oxidase ThiO -
  M4X66_RS00755 pilR 174507..175847 (-) 1341 WP_057409618.1 sigma-54 dependent transcriptional regulator Regulator
  M4X66_RS00760 pilS 175850..177442 (-) 1593 WP_249583468.1 ATP-binding protein Regulator
  M4X66_RS00765 - 177432..177671 (-) 240 WP_283778739.1 PP0621 family protein -
  M4X66_RS00770 - 177795..178817 (-) 1023 WP_043305096.1 outer membrane protein assembly factor BamD -
  M4X66_RS00775 rluD 178967..179929 (+) 963 WP_004884074.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M4X66_RS00780 pgeF 179926..180654 (+) 729 WP_249583469.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58416.53 Da        Isoelectric Point: 7.0354

>NTDB_id=688252 M4X66_RS00760 WP_249583468.1 175850..177442(-) (pilS) [Pseudomonas viridiflava strain JACO-C-5]
MTAEPLSLGTAQAQRILRLYHLYRLVIGVLLVSLISSSLDTELLQMANPNLFRAGCWLYLVSNILVVVLLERPSRQSHLF
SLALADAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISLGTPSVSSDYVQAGLLG
AMCFAAAMLVQALTARMLNSEVLAKQRAADVNNLEELNALILQRMRTGILVLDARRQVLLANQGALNLLGHEQLVGEVID
HYCPQLVDRLRHWLINPVMVPRSLSTSPIGPELQPSFAAVNRGDQLQTLIFLEDLSQVAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELTAPDRRLGQIIHDQSRRINLVIENVLQLSRRREAQRELLDLKNWLENFVAEFRSTALPD
QRVETEIGVGMLTTRMDPEQLNQVVTNLLQNGLRYSRQHHSTAQVLLRLYHDQKSDLPTLEVLDDGPGVSEKHLSRLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYAPREGGGSCMRITFAHPFKPS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=688252 M4X66_RS00760 WP_249583468.1 175850..177442(-) (pilS) [Pseudomonas viridiflava strain JACO-C-5]
GTGACCGCTGAGCCCCTTTCGCTCGGCACGGCCCAAGCGCAACGGATCCTGCGGCTTTATCACCTTTATCGCCTCGTCAT
CGGTGTCCTGCTGGTATCGCTGATTTCCAGCAGCCTGGACACCGAACTGTTGCAGATGGCTAACCCGAACCTGTTTCGCG
CAGGTTGCTGGCTGTATCTGGTGTCCAATATCCTGGTGGTGGTGCTGCTGGAGCGGCCGAGCCGCCAGTCTCATCTTTTC
AGCCTGGCGCTGGCAGACGCAATCATGCTTTCCGGCCTTTTCTACGCGGCCGGAGGCCCTTCCAGCGGTATCGGCAACCT
GCTGATCGCGTCGGTCGCGATCAGTAATGTGCTGTTGCGTGGCCGCATCGGGCTGCTGATCGCGGCAGTCTCGGCCATCG
GCATCATTTACCTCACCTTCTACATCAGCCTCGGGACGCCATCGGTTTCCAGCGATTACGTGCAGGCTGGCCTGCTGGGA
GCCATGTGTTTCGCTGCCGCCATGCTGGTACAGGCACTCACGGCACGCATGCTGAACAGCGAAGTGCTGGCCAAGCAGCG
GGCTGCGGATGTCAATAACCTTGAAGAACTCAACGCCTTGATTCTGCAACGCATGCGCACCGGCATTCTGGTACTGGATG
CGCGCCGTCAGGTGTTGCTGGCCAATCAGGGCGCGCTGAACCTGCTCGGGCATGAGCAACTGGTCGGCGAAGTGATCGAC
CATTACTGCCCGCAATTGGTGGATCGCCTGCGCCACTGGCTGATCAACCCGGTCATGGTGCCCCGCAGCCTCTCGACTTC
TCCCATCGGGCCAGAGCTGCAACCCAGCTTTGCCGCAGTCAACCGGGGCGATCAGTTGCAGACCCTGATCTTCCTGGAAG
ACCTGTCGCAGGTTGCCCATCAGGCCCAGCAGCTCAAGCTCGCCGCACTGGGCCGCCTCACCGCCGGCATCGCTCATGAA
ATCCGCAACCCGCTCGGCGCTGTCAGCCATGCGGCGCAGTTGCTGAACGAGTCGGAAGAACTGACCGCGCCAGACCGGCG
TCTGGGGCAGATCATTCATGACCAGTCACGGCGGATCAATCTGGTTATCGAGAACGTGCTGCAACTGTCCAGACGACGCG
AAGCCCAGCGCGAACTGCTTGACCTGAAAAACTGGCTGGAGAACTTCGTGGCGGAATTTCGCAGCACCGCCCTGCCTGAC
CAGCGGGTCGAGACCGAAATCGGTGTCGGCATGCTGACCACGCGCATGGACCCCGAGCAGTTGAATCAGGTGGTCACCAA
CCTGCTGCAGAACGGCCTGCGCTACAGCCGCCAGCACCACTCCACCGCGCAGGTGCTGCTGAGGCTGTATCACGATCAGA
AAAGCGATCTGCCGACGCTGGAGGTCCTTGATGACGGCCCCGGCGTCAGCGAGAAGCACCTGAGCAGACTGTTCGAACCG
TTCTTCACCACCGAAAGCAAAGGGACGGGCCTTGGCCTCTACCTGTCGCGCGAGTTATGCGAAAGCAATCAAGCCCATCT
GGACTACGCCCCTCGGGAAGGCGGCGGCAGTTGCATGCGGATTACCTTCGCCCACCCGTTCAAACCGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.77

100

0.619