Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M3Y14_RS20950 Genome accession   NZ_CP097257
Coordinates   3977993..3979732 (-) Length   579 a.a.
NCBI ID   WP_219920123.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain Bt Gxmzu777-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3972993..3984732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3Y14_RS20925 (M3Y14_20855) - 3974121..3974354 (+) 234 WP_219920094.1 DUF2627 domain-containing protein -
  M3Y14_RS20930 (M3Y14_20860) - 3974397..3975131 (-) 735 WP_215579625.1 glycerophosphodiester phosphodiesterase -
  M3Y14_RS20935 (M3Y14_20865) - 3975182..3975328 (+) 147 WP_001247671.1 YycC family protein -
  M3Y14_RS20940 (M3Y14_20870) spo0A 3975500..3976294 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  M3Y14_RS20945 (M3Y14_20875) spoIVB 3976581..3977873 (-) 1293 WP_219920121.1 SpoIVB peptidase -
  M3Y14_RS20950 (M3Y14_20880) recN 3977993..3979732 (-) 1740 WP_219920123.1 DNA repair protein RecN Machinery gene
  M3Y14_RS20955 (M3Y14_20885) argR 3980003..3980452 (-) 450 WP_002015076.1 arginine repressor ArgR -
  M3Y14_RS20960 (M3Y14_20890) - 3980595..3981434 (-) 840 WP_264539139.1 TlyA family RNA methyltransferase -
  M3Y14_RS20965 (M3Y14_20895) dxs 3981438..3983330 (-) 1893 WP_219920127.1 1-deoxy-D-xylulose-5-phosphate synthase -
  M3Y14_RS20970 (M3Y14_20900) ispA 3983639..3984532 (-) 894 WP_264539140.1 (2E,6E)-farnesyl diphosphate synthase -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 65755.98 Da        Isoelectric Point: 5.1031

>NTDB_id=688167 M3Y14_RS20950 WP_219920123.1 3977993..3979732(-) (recN) [Bacillus thuringiensis strain Bt Gxmzu777-1]
MLSELSIRNFAIIEALNISFQKGLTVLSGETGAGKSIIIDAISLLVGGRGSAEFVRYGTEKAEIEGLFYVEDDKHPCIAK
AEELDIEIEDGMIILKRDIAANGKSVCRVNGKLVTLSILKEIGKTLVDIHGQHETQDLMNEERHMFMLDHFDGNRIVKQL
DIYQNVYTDYEKLKKQLKSLSENEQQMAHRLDLIQFQHEEIRKADLKMDEEYELTEERLKISNFEKIYKALGDAYRSLSG
DGQGLDHVRNAMGQMESITHLDEAYQENHDSIANSYYLLEEVAYQLREKLDMMEYDPKRLDEIETRLNEIRMLKRKYGNT
VEEILAYADKIEQEIFTIENKDVHIETTRKQLTKLESVIVKEATLLSTMRHELADHLTSAIHQELKELYMEKTKFEVRIM
KRVGNVEEPLVEGTPVKLTADGYDHVEFYISTNPGEPLKPLSKVASGGELSRIILALKSIFSKHQGVASVIFDEVDTGVS
GRVAQAIAEKIYRVSVNSQVLCITHLPQVASMADSHLFIRKQVANDRTITSVTVLSTDEKVTEIARMISGVEITDLTTEH
AKELLTQAHHFKQTAEAIQ

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=688167 M3Y14_RS20950 WP_219920123.1 3977993..3979732(-) (recN) [Bacillus thuringiensis strain Bt Gxmzu777-1]
TTGTTATCGGAATTATCGATCAGAAACTTTGCTATTATTGAGGCATTAAATATTTCTTTTCAAAAAGGTTTAACCGTTTT
AAGTGGTGAAACAGGAGCTGGAAAATCTATTATTATTGATGCAATTAGTTTGCTTGTTGGTGGCCGTGGTTCAGCAGAAT
TTGTTCGATATGGAACAGAAAAGGCTGAGATAGAAGGATTATTCTATGTAGAGGATGACAAGCATCCATGTATCGCAAAG
GCAGAAGAGTTAGATATAGAAATAGAAGATGGTATGATTATTTTGAAGCGTGACATCGCTGCGAACGGAAAAAGTGTCTG
TCGTGTAAATGGGAAACTTGTTACACTCAGCATATTAAAAGAGATTGGAAAAACGCTAGTTGATATTCATGGACAGCATG
AAACACAAGATTTAATGAATGAAGAGCGTCATATGTTTATGCTTGATCATTTTGATGGAAATCGCATTGTTAAACAATTG
GACATATATCAAAATGTATATACAGACTATGAGAAGTTAAAAAAACAGCTGAAATCTTTGAGTGAAAATGAACAACAAAT
GGCCCATCGTCTAGATTTAATTCAATTCCAACATGAAGAGATTCGTAAGGCGGATTTAAAAATGGATGAAGAATATGAAT
TGACTGAGGAACGATTAAAAATCTCTAATTTTGAAAAGATTTATAAAGCATTAGGAGATGCGTATCGTTCGTTAAGTGGA
GACGGACAGGGATTAGATCACGTAAGAAATGCAATGGGACAAATGGAGAGTATTACGCACTTAGATGAAGCGTATCAAGA
AAATCATGATTCTATTGCAAATAGTTATTACTTATTAGAAGAAGTTGCATACCAGCTTAGAGAAAAGTTAGATATGATGG
AATATGATCCGAAACGTCTAGATGAAATTGAAACACGTTTGAATGAAATCCGTATGTTAAAGAGAAAGTATGGAAATACT
GTAGAAGAGATTTTAGCGTATGCTGATAAAATTGAACAAGAAATTTTTACGATTGAAAATAAAGACGTACATATTGAAAC
GACGAGAAAGCAGTTAACGAAATTAGAAAGTGTTATTGTAAAAGAAGCAACGTTGTTAAGTACTATGCGTCATGAGCTTG
CAGATCATCTTACAAGCGCTATTCATCAAGAATTAAAAGAACTATATATGGAAAAAACGAAATTTGAAGTGAGAATTATG
AAGAGGGTAGGAAATGTAGAAGAACCTCTCGTGGAAGGAACACCGGTAAAACTTACGGCGGATGGCTACGATCATGTGGA
ATTTTATATTTCAACGAATCCGGGTGAACCTTTAAAGCCACTTTCAAAGGTCGCTTCTGGCGGAGAGTTATCTCGTATTA
TTTTAGCTTTAAAAAGCATTTTTTCTAAGCATCAAGGTGTTGCATCTGTTATTTTTGATGAAGTGGATACGGGTGTGAGT
GGTCGGGTGGCACAGGCTATTGCGGAAAAAATTTATCGTGTATCAGTAAACTCGCAAGTACTTTGTATTACGCACTTACC
TCAAGTAGCTTCAATGGCGGACTCTCATTTATTTATTAGAAAACAAGTGGCGAATGATCGGACGATTACATCGGTTACCG
TGTTAAGTACGGATGAAAAAGTAACAGAAATTGCTCGAATGATTTCTGGTGTTGAAATTACAGATTTAACGACAGAGCAT
GCGAAAGAGTTACTTACGCAAGCGCATCATTTCAAACAGACAGCAGAGGCTATCCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.931

100

0.599