Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS091_RS05530 Genome accession   NZ_CP113037
Coordinates   1080854..1081249 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain Zilean     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1075854..1086249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS091_RS05500 - 1075874..1076107 (+) 234 WP_000384520.1 DUF1146 family protein -
  OS091_RS05505 murA 1076218..1077483 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS091_RS05510 fabZ 1077517..1077957 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS091_RS05515 - 1078014..1078454 (-) 441 WP_000846746.1 YwpF-like family protein -
  OS091_RS05520 istA 1078665..1079957 (+) 1293 WP_000777467.1 IS21 family transposase -
  OS091_RS05525 istB 1079950..1080711 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  OS091_RS05530 ssb 1080854..1081249 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS091_RS05535 sceD 1081638..1082333 (+) 696 WP_000751998.1 lytic transglycosylase SceD -
  OS091_RS05540 tenA 1082721..1083410 (+) 690 WP_000396067.1 thiaminase II -
  OS091_RS05545 thiD 1083403..1084233 (+) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS091_RS05550 thiM 1084217..1085008 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  OS091_RS05555 thiE 1085010..1085651 (+) 642 WP_000483147.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=687973 OS091_RS05530 WP_000932694.1 1080854..1081249(+) (ssb) [Staphylococcus aureus strain Zilean]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=687973 OS091_RS05530 WP_000932694.1 1080854..1081249(+) (ssb) [Staphylococcus aureus strain Zilean]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992