Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OS083_RS06570 Genome accession   NZ_CP113027
Coordinates   1264440..1264835 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus strain Syndra     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1259440..1269835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS083_RS06540 - 1259460..1259693 (+) 234 WP_000384520.1 DUF1146 family protein -
  OS083_RS06545 murA 1259804..1261069 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  OS083_RS06550 fabZ 1261103..1261543 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OS083_RS06555 - 1261600..1262040 (-) 441 WP_000846746.1 YwpF-like family protein -
  OS083_RS06560 istA 1262251..1263543 (+) 1293 WP_000777467.1 IS21 family transposase -
  OS083_RS06565 istB 1263536..1264297 (+) 762 WP_001066124.1 IS21-like element helper ATPase IstB -
  OS083_RS06570 ssb 1264440..1264835 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  OS083_RS06575 sceD 1265224..1265919 (+) 696 WP_000751997.1 lytic transglycosylase SceD -
  OS083_RS06580 tenA 1266307..1266996 (+) 690 WP_000396067.1 thiaminase II -
  OS083_RS06585 thiD 1266989..1267819 (+) 831 WP_000594943.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  OS083_RS06590 thiM 1267803..1268594 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  OS083_RS06595 thiE 1268596..1269237 (+) 642 WP_000483147.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=687705 OS083_RS06570 WP_000932694.1 1264440..1264835(+) (ssb) [Staphylococcus aureus strain Syndra]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=687705 OS083_RS06570 WP_000932694.1 1264440..1264835(+) (ssb) [Staphylococcus aureus strain Syndra]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992