Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OS090_RS08800 Genome accession   NZ_CP113018
Coordinates   1666735..1667421 (+) Length   228 a.a.
NCBI ID   WP_001792568.1    Uniprot ID   A0A0H2XJ29
Organism   Staphylococcus aureus strain Taliyah     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1661735..1672421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS090_RS08765 yqeH 1662262..1663362 (+) 1101 WP_001280148.1 ribosome biogenesis GTPase YqeH -
  OS090_RS08770 aroE 1663376..1664182 (+) 807 WP_000666761.1 shikimate dehydrogenase -
  OS090_RS08775 yhbY 1664186..1664476 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  OS090_RS08780 nadD 1664479..1665048 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  OS090_RS08785 yqeK 1665038..1665622 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OS090_RS08790 rsfS 1665623..1665976 (+) 354 WP_001088022.1 ribosome silencing factor -
  OS090_RS08795 - 1665979..1666695 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  OS090_RS08800 comEA 1666735..1667421 (+) 687 WP_001792568.1 ComEA family DNA-binding protein Machinery gene
  OS090_RS08805 - 1667513..1667974 (+) 462 WP_000439693.1 ComE operon protein 2 -
  OS090_RS08810 comEC 1667979..1670180 (+) 2202 WP_001807336.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OS090_RS08815 holA 1670237..1671211 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  OS090_RS08820 rpsT 1671256..1671507 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25863.49 Da        Isoelectric Point: 9.3305

>NTDB_id=687632 OS090_RS08800 WP_001792568.1 1666735..1667421(+) (comEA) [Staphylococcus aureus strain Taliyah]
MVLLYQFLLRYKDFLTQWKLYILSAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=687632 OS090_RS08800 WP_001792568.1 1666735..1667421(+) (comEA) [Staphylococcus aureus strain Taliyah]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTCTAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAAGTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGAGGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XJ29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

98.238

99.561

0.978
  comEA Staphylococcus aureus N315

97.357

99.561

0.969