Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HIY_RS04025 Genome accession   NZ_AP022867
Coordinates   769362..769976 (+) Length   204 a.a.
NCBI ID   WP_005656310.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018-Y40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 764362..774976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIY_RS04000 (HIY_07690) - 764779..765297 (-) 519 WP_005656314.1 isoprenylcysteine carboxyl methyltransferase family protein -
  HIY_RS04005 (HIY_07700) aspS 765516..767282 (+) 1767 WP_005656313.1 aspartate--tRNA ligase -
  HIY_RS04010 (HIY_07710) nudB 767304..767780 (+) 477 WP_005656312.1 dihydroneopterin triphosphate diphosphatase -
  HIY_RS04015 (HIY_07720) - 767940..768680 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  HIY_RS04020 (HIY_07730) ruvC 768727..769299 (+) 573 WP_005656311.1 crossover junction endodeoxyribonuclease RuvC -
  HIY_RS04025 (HIY_07740) ruvA 769362..769976 (+) 615 WP_005656310.1 Holliday junction branch migration protein RuvA Machinery gene
  HIY_RS04030 (HIY_07750) ruvB 769984..770990 (+) 1007 Protein_778 Holliday junction branch migration DNA helicase RuvB -
  HIY_RS04035 (HIY_07770) - 771042..771329 (-) 288 WP_005656308.1 DUF5339 domain-containing protein -
  HIY_RS04040 (HIY_07780) xerD 771502..772395 (-) 894 WP_005636429.1 site-specific tyrosine recombinase XerD -
  HIY_RS04045 (HIY_07790) - 772426..773592 (-) 1167 WP_005656307.1 3-phenylpropionate MFS transporter -
  HIY_RS04050 (HIY_07800) proC 773592..774407 (-) 816 WP_005656306.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22612.34 Da        Isoelectric Point: 6.2711

>NTDB_id=68747 HIY_RS04025 WP_005656310.1 769362..769976(+) (ruvA) [Haemophilus influenzae strain 2018-Y40]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHFVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPSVPSIEPSVENS
SDEAISALIALGYKPSEAEKMVKRVAKPELTSEQVIREALKTAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=68747 HIY_RS04025 WP_005656310.1 769362..769976(+) (ruvA) [Haemophilus influenzae strain 2018-Y40]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTTAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGTCAAGAAACGACTTTATTCACCCATTTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTAGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCGATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GTGTAAAACAAAGTGATTTCTTTGTAGAAAGTACTCATATTCCGTCAGTTCCATCTATTGAACCGAGTGTAGAAAATTCA
TCTGATGAAGCTATTTCAGCCTTGATTGCTTTAGGTTATAAACCTTCAGAAGCAGAAAAAATGGTGAAACGAGTTGCTAA
GCCAGAATTAACCAGTGAACAAGTTATCCGCGAAGCGTTAAAAACCGCACTGTAG

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(161-202)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae R6

36.634

99.02

0.363
  ruvA Streptococcus pneumoniae D39

36.634

99.02

0.363

Multiple sequence alignment