Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   M2M89_RS15900 Genome accession   NZ_CP097130
Coordinates   3081665..3082309 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain S16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3076665..3087309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS15865 mrpB 3077857..3078288 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  M2M89_RS15870 mrpC 3078288..3078629 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  M2M89_RS15875 mrpD 3078622..3080103 (+) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  M2M89_RS15880 mrpE 3080109..3080585 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  M2M89_RS15885 mrpF 3080585..3080869 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  M2M89_RS15890 mnhG 3080853..3081227 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  M2M89_RS15895 yuxO 3081266..3081646 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  M2M89_RS15900 comA 3081665..3082309 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  M2M89_RS15905 - 3082390..3084702 (-) 2313 Protein_3077 histidine kinase -
  M2M89_RS15910 comX 3084718..3084939 (-) 222 WP_014480704.1 competence pheromone ComX -
  M2M89_RS15915 - 3084941..3085804 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  M2M89_RS15920 degQ 3085989..3086129 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  M2M89_RS15925 - 3086351..3086413 (+) 63 Protein_3081 hypothetical protein -
  M2M89_RS15930 - 3086592..3086960 (+) 369 WP_041850584.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=687454 M2M89_RS15900 WP_003220716.1 3081665..3082309(-) (comA) [Bacillus subtilis strain S16]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=687454 M2M89_RS15900 WP_003220716.1 3081665..3082309(-) (comA) [Bacillus subtilis strain S16]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1