Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M3M37_RS06240 Genome accession   NZ_CP097121
Coordinates   1240808..1241329 (-) Length   173 a.a.
NCBI ID   WP_252794953.1    Uniprot ID   -
Organism   Fructilactobacillus carniphilus strain KI4_A6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1235808..1246329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M37_RS06220 (M3M37_06220) dnaB 1236394..1237806 (-) 1413 WP_252794950.1 replicative DNA helicase -
  M3M37_RS06225 (M3M37_06225) rplI 1237840..1238292 (-) 453 WP_252794951.1 50S ribosomal protein L9 -
  M3M37_RS06230 (M3M37_06230) - 1238341..1240362 (-) 2022 WP_252794952.1 DHH family phosphoesterase -
  M3M37_RS06235 (M3M37_06235) rpsR 1240516..1240767 (-) 252 WP_252766546.1 30S ribosomal protein S18 -
  M3M37_RS06240 (M3M37_06240) ssb 1240808..1241329 (-) 522 WP_252794953.1 single-stranded DNA-binding protein Machinery gene
  M3M37_RS06245 (M3M37_06245) rpsF 1241361..1241654 (-) 294 WP_252794954.1 30S ribosomal protein S6 -
  M3M37_RS06250 (M3M37_06250) gyrA 1241844..1244327 (-) 2484 WP_252795932.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18940.50 Da        Isoelectric Point: 4.4652

>NTDB_id=687353 M3M37_RS06240 WP_252794953.1 1240808..1241329(-) (ssb) [Fructilactobacillus carniphilus strain KI4_A6]
MINTVVLTGRLTRDVDLRYTQSGAAVGSFTLAVDRRFTNQNGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRLQTR
NYENKQGQRVYVTEVVVENFTLLEPRNGGQQGNNNMGNQAPQQNPFGTPQSNNFGGQSDSNPANNNQNGNDNSADPFAGS
GDQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=687353 M3M37_RS06240 WP_252794953.1 1240808..1241329(-) (ssb) [Fructilactobacillus carniphilus strain KI4_A6]
ATGATTAATACCGTCGTCCTAACCGGACGTTTAACACGAGATGTTGATTTGCGATACACCCAAAGCGGCGCGGCCGTGGG
TTCTTTTACCCTAGCGGTCGATCGCCGCTTCACCAATCAAAATGGTGACCGGGAAGCTGACTTCGTTAATTGTGTTATTT
GGCGGAAATCAGCTGAAAATCTTGCTAACTTCGTTCATAAGGGTTCGCTGCTGGGAGTAGAAGGGCGGCTTCAAACGCGT
AACTACGAAAATAAGCAGGGCCAACGAGTTTATGTAACGGAAGTCGTGGTTGAAAACTTTACCTTGTTAGAACCCCGTAA
CGGTGGGCAACAAGGCAATAACAACATGGGCAACCAAGCTCCGCAACAAAATCCATTTGGGACGCCGCAATCCAACAACT
TTGGCGGACAATCAGATTCCAATCCGGCTAACAACAACCAGAATGGGAACGATAACTCTGCCGATCCGTTTGCGGGTTCT
GGTGACCAAATCGATATTTCCGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.088

100

0.671
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.607