Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M3M40_RS05985 Genome accession   NZ_CP097119
Coordinates   1164019..1164540 (-) Length   173 a.a.
NCBI ID   WP_252766547.1    Uniprot ID   A0A9Q9E1R6
Organism   Fructilactobacillus cliffordii strain KI4_B1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1159019..1169540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M40_RS05965 (M3M40_05965) dnaB 1159602..1161014 (-) 1413 WP_252766543.1 replicative DNA helicase -
  M3M40_RS05970 (M3M40_05970) rplI 1161048..1161500 (-) 453 WP_252766544.1 50S ribosomal protein L9 -
  M3M40_RS05975 (M3M40_05975) - 1161549..1163570 (-) 2022 WP_252766545.1 DHH family phosphoesterase -
  M3M40_RS05980 (M3M40_05980) rpsR 1163726..1163977 (-) 252 WP_252766546.1 30S ribosomal protein S18 -
  M3M40_RS05985 (M3M40_05985) ssb 1164019..1164540 (-) 522 WP_252766547.1 single-stranded DNA-binding protein Machinery gene
  M3M40_RS05990 (M3M40_05990) rpsF 1164572..1164865 (-) 294 WP_252766548.1 30S ribosomal protein S6 -
  M3M40_RS05995 (M3M40_05995) gyrA 1165055..1167538 (-) 2484 WP_252767493.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18930.46 Da        Isoelectric Point: 4.4652

>NTDB_id=687333 M3M40_RS05985 WP_252766547.1 1164019..1164540(-) (ssb) [Fructilactobacillus cliffordii strain KI4_B1]
MINTVVLTGRLTRDVDLRYTQSGAAVGSFTLAVDRRFTNQNGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRIQTR
NYENKQGQRVYVTEVVVENFTLLEPRNGGQQGNNNMGNQASQQNPFGTPQSNNFGGQSDSNPANNNQNGNDNSADPFAGS
GDQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=687333 M3M40_RS05985 WP_252766547.1 1164019..1164540(-) (ssb) [Fructilactobacillus cliffordii strain KI4_B1]
ATGATTAATACCGTTGTCCTAACCGGACGTTTAACACGAGATGTTGATTTGCGATACACCCAAAGCGGCGCAGCCGTGGG
TTCTTTTACCCTGGCTGTCGATCGGCGCTTCACCAATCAAAATGGTGACCGGGAAGCTGACTTCGTTAATTGTGTTATTT
GGCGGAAATCGGCTGAAAATCTTGCTAACTTCGTTCATAAGGGTTCTCTGCTGGGAGTAGAAGGGCGGATTCAAACGCGT
AACTACGAAAACAAGCAGGGTCAACGAGTTTATGTAACGGAAGTTGTGGTTGAAAACTTTACTTTGTTAGAACCCCGTAA
TGGTGGACAACAAGGTAATAACAACATGGGCAACCAAGCTTCGCAACAAAATCCATTTGGGACGCCACAATCCAACAACT
TTGGCGGACAATCAGATTCCAATCCGGCTAACAATAACCAGAATGGGAACGATAATTCTGCCGATCCGTTCGCGGGTTCT
GGTGACCAAATCGATATTTCCGATGACGATTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.088

100

0.671
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.429

100

0.601