Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M3M39_RS01250 Genome accession   NZ_CP097118
Coordinates   263854..264372 (-) Length   172 a.a.
NCBI ID   WP_252797427.1    Uniprot ID   -
Organism   Fructilactobacillus hinvesii strain KI11_C11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 258854..269372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M39_RS01230 (M3M39_01230) dnaB 259444..260850 (-) 1407 WP_252797424.1 replicative DNA helicase -
  M3M39_RS01235 (M3M39_01235) rplI 260884..261336 (-) 453 WP_252797425.1 50S ribosomal protein L9 -
  M3M39_RS01240 (M3M39_01240) - 261385..263409 (-) 2025 WP_252797426.1 DHH family phosphoesterase -
  M3M39_RS01245 (M3M39_01245) rpsR 263561..263812 (-) 252 WP_252766546.1 30S ribosomal protein S18 -
  M3M39_RS01250 (M3M39_01250) ssb 263854..264372 (-) 519 WP_252797427.1 single-stranded DNA-binding protein Machinery gene
  M3M39_RS01255 (M3M39_01255) rpsF 264402..264695 (-) 294 WP_252797428.1 30S ribosomal protein S6 -
  M3M39_RS01260 (M3M39_01260) gyrA 264887..267382 (-) 2496 WP_252797925.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18810.39 Da        Isoelectric Point: 4.4652

>NTDB_id=687300 M3M39_RS01250 WP_252797427.1 263854..264372(-) (ssb) [Fructilactobacillus hinvesii strain KI11_C11]
MINTVVLTGRLTRDVDLRYTQSGAAVGSFTLAVDRRFTNQNGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRLQTR
NYENKQGQRVYVTEVVVENFTLLEPRNGGQQGNNMGNQAPQQNPFGTPQSNNFGGQSDANPANNNQNGNDNSADPFAGSG
DQIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=687300 M3M39_RS01250 WP_252797427.1 263854..264372(-) (ssb) [Fructilactobacillus hinvesii strain KI11_C11]
ATGATTAATACCGTTGTCCTAACCGGACGTTTAACACGTGATGTTGATTTGCGATACACCCAAAGTGGCGCAGCCGTTGG
GTCCTTTACCCTCGCGGTTGACCGTCGCTTCACCAACCAAAATGGTGATCGGGAAGCTGACTTCGTTAACTGTGTTATTT
GGCGGAAATCAGCTGAAAACCTTGCTAACTTCGTTCATAAGGGTTCCCTGCTGGGAGTAGAAGGTCGATTACAGACCCGT
AACTACGAAAATAAGCAGGGTCAACGAGTTTATGTAACGGAAGTTGTTGTTGAAAACTTTACCCTGTTAGAACCCCGTAA
TGGGGGGCAACAAGGGAACAACATGGGCAACCAGGCTCCACAACAAAATCCATTTGGAACTCCCCAATCCAATAACTTCG
GTGGGCAATCCGATGCTAATCCGGCTAATAATAACCAGAATGGCAACGATAATTCCGCTGATCCGTTTGCGGGTTCAGGA
GACCAAATTGATATTTCCGATGACGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.641

100

0.68
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.61