Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M3M38_RS04390 Genome accession   NZ_CP097117
Coordinates   878431..878952 (-) Length   173 a.a.
NCBI ID   WP_252813684.1    Uniprot ID   -
Organism   Fructilactobacillus cliffordii strain KI11_D11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 873431..883952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M38_RS04370 (M3M38_04370) dnaB 874014..875426 (-) 1413 WP_252813681.1 replicative DNA helicase -
  M3M38_RS04375 (M3M38_04375) rplI 875460..875912 (-) 453 WP_252813682.1 50S ribosomal protein L9 -
  M3M38_RS04380 (M3M38_04380) - 875961..877982 (-) 2022 WP_252813683.1 DHH family phosphoesterase -
  M3M38_RS04385 (M3M38_04385) rpsR 878138..878389 (-) 252 WP_252766546.1 30S ribosomal protein S18 -
  M3M38_RS04390 (M3M38_04390) ssb 878431..878952 (-) 522 WP_252813684.1 single-stranded DNA-binding protein Machinery gene
  M3M38_RS04395 (M3M38_04395) rpsF 878984..879277 (-) 294 WP_252766548.1 30S ribosomal protein S6 -
  M3M38_RS04400 (M3M38_04400) gyrA 879467..881950 (-) 2484 WP_252814864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18953.50 Da        Isoelectric Point: 4.5876

>NTDB_id=687289 M3M38_RS04390 WP_252813684.1 878431..878952(-) (ssb) [Fructilactobacillus cliffordii strain KI11_D11]
MINTVVLTGRLTRDVDLRYTQSGAAVGSFTLAVDRRFTNQNGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRIQTR
NYENKQGQRVYVTEVVVENFTLLEPRNGGQQGNNNMGHQASQQNPFGTPQSNNFGGQSDSNPANNNQNGNDNSADPFAGS
GDQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=687289 M3M38_RS04390 WP_252813684.1 878431..878952(-) (ssb) [Fructilactobacillus cliffordii strain KI11_D11]
ATGATTAATACCGTTGTCCTAACCGGACGTTTAACACGAGATGTTGATTTGCGATACACCCAAAGCGGCGCAGCCGTGGG
TTCTTTTACCCTGGCTGTCGATCGGCGCTTCACCAATCAAAATGGTGACCGGGAAGCTGACTTTGTTAATTGTGTTATTT
GGCGGAAATCGGCTGAAAATCTTGCTAACTTCGTTCATAAGGGTTCTCTGCTGGGAGTAGAAGGGCGGATTCAAACGCGT
AACTACGAAAACAAGCAGGGTCAACGAGTTTATGTAACGGAAGTTGTGGTTGAAAACTTTACTTTGTTAGAACCCCGTAA
TGGTGGACAACAAGGTAATAACAACATGGGCCACCAAGCTTCGCAACAAAATCCATTTGGGACGCCACAATCCAACAACT
TTGGCGGACAATCAGATTCCAATCCGGCTAACAATAACCAGAATGGGAACGATAATTCTGCCGATCCGTTCGCGGGTTCT
GGTGACCAAATCGATATTTCCGATGACGATTTGCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.088

100

0.671
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.857

100

0.595