Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M3M35_RS04840 Genome accession   NZ_CP097116
Coordinates   959217..959741 (+) Length   174 a.a.
NCBI ID   WP_252749545.1    Uniprot ID   -
Organism   Fructilactobacillus myrtifloralis strain KI16_H9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 954217..964741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M35_RS04830 (M3M35_04830) gyrA 956212..958695 (+) 2484 WP_252750699.1 DNA gyrase subunit A -
  M3M35_RS04835 (M3M35_04835) rpsF 958893..959186 (+) 294 WP_252749544.1 30S ribosomal protein S6 -
  M3M35_RS04840 (M3M35_04840) ssb 959217..959741 (+) 525 WP_252749545.1 single-stranded DNA-binding protein Machinery gene
  M3M35_RS04845 (M3M35_04845) rpsR 959783..960034 (+) 252 WP_252749546.1 30S ribosomal protein S18 -
  M3M35_RS04850 (M3M35_04850) - 960187..962208 (+) 2022 WP_252749547.1 DHH family phosphoesterase -
  M3M35_RS04855 (M3M35_04855) rplI 962257..962709 (+) 453 WP_252749548.1 50S ribosomal protein L9 -
  M3M35_RS04860 (M3M35_04860) dnaB 962742..964145 (+) 1404 WP_252749549.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18906.42 Da        Isoelectric Point: 4.5876

>NTDB_id=687274 M3M35_RS04840 WP_252749545.1 959217..959741(+) (ssb) [Fructilactobacillus myrtifloralis strain KI16_H9]
MINTVVLTGRLTRDVDLRYTQSGAAVGSFTLAVDRRFTNQNGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRLQTR
NYENKQGQRVYVTEVVVENFTLLEPRNSGQSGNNAGNQAPQQNPFGTPQSNNFGGQADHNGANQSNPSNGNDNSADPFAG
SGDQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=687274 M3M35_RS04840 WP_252749545.1 959217..959741(+) (ssb) [Fructilactobacillus myrtifloralis strain KI16_H9]
ATGATTAATACCGTGGTCCTAACGGGACGATTAACACGAGATGTCGATTTACGATACACCCAAAGCGGGGCAGCCGTGGG
TTCCTTTACCCTAGCCGTTGATCGTCGCTTCACCAATCAAAATGGTGACCGGGAAGCTGACTTCGTTAATTGTGTTATTT
GGCGGAAATCAGCTGAAAACCTTGCCAACTTCGTTCATAAAGGGTCATTGCTTGGAGTAGAAGGCCGTTTGCAAACGCGG
AACTATGAAAACAAGCAGGGCCAACGAGTTTATGTAACTGAAGTCGTTGTTGAAAACTTTACCCTGTTGGAACCACGGAA
TAGTGGTCAATCAGGCAACAACGCTGGCAACCAAGCTCCTCAACAAAATCCATTTGGAACTCCGCAATCGAATAACTTCG
GTGGCCAAGCTGATCACAATGGTGCAAACCAGAGTAATCCTAGCAATGGGAATGATAATTCTGCCGATCCGTTTGCCGGT
TCAGGGGACCAAATCGATATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.842

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.887

100

0.609