Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | M3M50_RS26120 | Genome accession | NZ_CP097108 |
| Coordinates | 5901217..5902086 (+) | Length | 289 a.a. |
| NCBI ID | WP_232201609.1 | Uniprot ID | - |
| Organism | Pseudomonas bijieensis strain SP1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5896217..5907086
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M3M50_RS26095 (M3M50_26095) | - | 5896406..5896702 (+) | 297 | WP_109756358.1 | DUF2845 domain-containing protein | - |
| M3M50_RS26100 (M3M50_26100) | - | 5897016..5897369 (-) | 354 | WP_109756359.1 | BON domain-containing protein | - |
| M3M50_RS26105 (M3M50_26105) | - | 5897651..5898070 (-) | 420 | WP_134925863.1 | pilin | - |
| M3M50_RS26110 (M3M50_26110) | pilB | 5898295..5899995 (+) | 1701 | WP_109756360.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| M3M50_RS26115 (M3M50_26115) | pilC | 5899998..5901215 (+) | 1218 | WP_109756361.1 | type II secretion system F family protein | Machinery gene |
| M3M50_RS26120 (M3M50_26120) | pilD | 5901217..5902086 (+) | 870 | WP_232201609.1 | A24 family peptidase | Machinery gene |
| M3M50_RS26125 (M3M50_26125) | coaE | 5902086..5902709 (+) | 624 | WP_163856593.1 | dephospho-CoA kinase | - |
| M3M50_RS26130 (M3M50_26130) | yacG | 5902706..5902912 (+) | 207 | WP_109756364.1 | DNA gyrase inhibitor YacG | - |
| M3M50_RS26135 (M3M50_26135) | - | 5902909..5903124 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| M3M50_RS26140 (M3M50_26140) | - | 5903188..5903874 (-) | 687 | WP_116833474.1 | energy-coupling factor ABC transporter permease | - |
| M3M50_RS26145 (M3M50_26145) | - | 5904020..5904646 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| M3M50_RS26150 (M3M50_26150) | - | 5904643..5905170 (+) | 528 | WP_116833475.1 | MOSC domain-containing protein | - |
| M3M50_RS26155 (M3M50_26155) | - | 5905223..5905396 (+) | 174 | WP_003185543.1 | DUF3094 domain-containing protein | - |
| M3M50_RS26160 (M3M50_26160) | - | 5905457..5906755 (+) | 1299 | WP_212801468.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31807.92 Da Isoelectric Point: 7.3459
>NTDB_id=687113 M3M50_RS26120 WP_232201609.1 5901217..5902086(+) (pilD) [Pseudomonas bijieensis strain SP1]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPIYNLILPHSQCPHCGHRIR
AWENIPLLSYLMLGGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLDREWRLQAHDLLGLPAETPGPIYNLILPHSQCPHCGHRIR
AWENIPLLSYLMLGGRCSSCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAAMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVIGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=687113 M3M50_RS26120 WP_232201609.1 5901217..5902086(+) (pilD) [Pseudomonas bijieensis strain SP1]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGTCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCTGAAACCCCGGGCCCGATCTATAACCTGATCCTGCCCCACTCCCAATGCCCACACTGCGGCCATCGCATCCGG
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGGGCGGTCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAACTGGCCTGCGGCGCGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCGA
TGGTGATGGTGTTGTCCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTATTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGTTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGGGATGCCCCAGGGTCGACGCAGATTCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCGGCACTGCTCGGTCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCAAAGATGCTCGACCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCTGAAACCCCGGGCCCGATCTATAACCTGATCCTGCCCCACTCCCAATGCCCACACTGCGGCCATCGCATCCGG
GCCTGGGAAAACATTCCGCTGCTCAGCTACCTGATGCTGGGCGGTCGCTGTTCGAGCTGCGCCGCGCCCATCGGCAGGCG
TTACCCCCTGACCGAACTGGCCTGCGGCGCGCTGTCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCGA
TGGTGATGGTGTTGTCCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTA
TTGCCGTTATTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAACCAGGCGATGTGGGGCGCGGT
GGCCGGTTATCTGGCGCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAGGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGTTGTTGTTGTCGTCGCTGGTGGGC
GCCGTTATCGGGGTCATCGTGCTGCGCCTGCGGGATGCCCCAGGGTCGACGCAGATTCCCTTTGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.465 |
98.27 |
0.516 |
| pilD | Vibrio campbellii strain DS40M4 |
50.175 |
98.616 |
0.495 |
| pilD | Acinetobacter baumannii D1279779 |
47.703 |
97.924 |
0.467 |
| pilD | Acinetobacter nosocomialis M2 |
47.687 |
97.232 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
46.341 |
99.308 |
0.46 |