Detailed information NTG0687097

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: M3M50_RS03100
• Genome accession: NZ_CP097108
• Coordinates: 719284..720348 (+)
• Length: 354 a.a.
• NCBI ID: WP_109752037.1
• Uniprot ID: -
• Organism: Pseudomonas bijieensis strain SP1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 714284..725348

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M3M50_RS03085 (M3M50_03085)	rpmE	714539..714763 (+)	225	WP_003196965.1	50S ribosomal protein L31	-
M3M50_RS03090 (M3M50_03090)	-	715067..716335 (+)	1269	WP_109752035.1	malic enzyme-like NAD(P)-binding protein	-
M3M50_RS03095 (M3M50_03095)	-	716632..719076 (-)	2445	WP_232201290.1	penicillin-binding protein 1A	-
M3M50_RS03100 (M3M50_03100)	comM	719284..720348 (+)	1065	WP_109752037.1	pilus assembly protein PilM	Machinery gene
M3M50_RS03105 (M3M50_03105)	-	720348..720914 (+)	567	WP_109752038.1	PilN domain-containing protein	-
M3M50_RS03110 (M3M50_03110)	pilO	720911..721534 (+)	624	WP_109752039.1	type 4a pilus biogenesis protein PilO	-
M3M50_RS03115 (M3M50_03115)	-	721531..722058 (+)	528	WP_109752040.1	pilus assembly protein PilP	-
M3M50_RS03120 (M3M50_03120)	pilQ	722072..724159 (+)	2088	WP_116833986.1	type IV pilus secretin PilQ	Machinery gene
M3M50_RS03125 (M3M50_03125)	aroK	724164..724682 (+)	519	WP_003196983.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38067.64 Da
• Isoelectric Point: 4.9070

>NTDB_id=687097 M3M50_RS03100 WP_109752037.1 719284..720348(+) (comM) [Pseudomonas bijieensis strain SP1]
MLRLFNKKAHTLLGIDISSTSVKLLELSRQGERYRVESYAVEPLPANAVVEKNIADLEGVGQALSRLLAKAKTPVRSVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKIEADQYIPYPLDEVAIDFEVVGVSPRSAERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERAFGLLATQLAASQERLTVAVIDIGATMTTLSVLHNGRIIYTREQLFGGRQLTEEIQRRYGLTP
EQAGLAKKQGGLPDDYLSEVLQPFREALVQQVSRSLQFFFASGQYSAVDHILLAGGTASVAGLDRLIEQRLGTPTQVANP
FTNMALGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=687097 M3M50_RS03100 WP_109752037.1 719284..720348(+) (comM) [Pseudomonas bijieensis strain SP1]
GTGCTACGACTCTTCAATAAAAAAGCCCATACGCTTCTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTCGAGTT
GAGCCGCCAGGGCGAGCGATATCGCGTCGAGTCCTACGCGGTCGAACCGTTGCCGGCCAACGCCGTGGTCGAGAAGAACA
TCGCCGATCTCGAAGGGGTGGGCCAGGCATTGTCACGGCTGTTGGCCAAGGCCAAGACGCCCGTGCGTAGCGTGGCGGTG
GCCGTTGCGGGGTCGGCGGTGATTACCAAGACCATCGAGATGGACGCCGGGTTGTCCGACGATGACATGGAAAACCAGCT
CAAGATCGAGGCCGATCAATACATTCCCTATCCGCTGGATGAGGTGGCCATCGATTTCGAAGTGGTGGGCGTTTCGCCGC
GCAGTGCCGAGCGCGTCGAAGTGCTGCTGGCGGCCTGCCGCAAGGAAAACGTCGAGGTCCGCGAGGCCGCGTTGGCGCTC
GCCGGGCTGACGGCCCGGGTGGTCGACGTGGAGGCTTATGCGCTGGAGCGTGCTTTCGGCTTGCTCGCCACGCAACTGGC
CGCCTCCCAGGAACGGCTGACTGTGGCGGTTATCGACATCGGCGCCACCATGACCACCCTCAGCGTGCTGCACAACGGGC
GCATCATCTATACCCGCGAACAATTGTTCGGCGGCCGCCAACTGACCGAGGAAATTCAGCGCCGCTATGGCTTGACGCCC
GAGCAGGCCGGCTTGGCAAAGAAGCAGGGAGGGCTGCCGGACGATTACCTGAGCGAAGTGTTGCAACCCTTTCGCGAGGC
TCTGGTACAGCAGGTCTCGCGATCCCTGCAGTTCTTCTTCGCCTCGGGCCAGTACAGTGCGGTCGACCACATCCTGCTGG
CCGGGGGCACGGCTTCGGTCGCCGGCCTGGATCGGCTGATCGAACAACGCCTGGGTACCCCGACCCAGGTGGCCAACCCG
TTTACCAACATGGCCCTGGGCAGCAAGGTCAATGCCGGGGCGCTGGCCAGTGATGCACCGGCGCTGATGATTGCCTGCGG
GCTGGCCCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	55.65	100	0.557
pilM	Acinetobacter baumannii D1279779	55.65	100	0.557
comM	Acinetobacter baylyi ADP1	54.237	100	0.542
pilM	Legionella pneumophila strain ERS1305867	48.305	100	0.483