Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   N7925_RS16460 Genome accession   NZ_CP112880
Coordinates   3689325..3689993 (-) Length   222 a.a.
NCBI ID   WP_217228327.1    Uniprot ID   -
Organism   Streptomyces sp. CA-278952     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3684325..3694993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7925_RS16435 (N7925_16440) - 3684834..3686117 (-) 1284 WP_265600351.1 adenylosuccinate synthase -
  N7925_RS16440 (N7925_16445) - 3686304..3687185 (+) 882 WP_265600352.1 diacylglycerol kinase -
  N7925_RS16445 (N7925_16450) - 3687219..3687491 (+) 273 WP_265600353.1 DUF1876 domain-containing protein -
  N7925_RS16450 (N7925_16455) - 3687620..3687961 (+) 342 WP_265600354.1 hypothetical protein -
  N7925_RS16455 (N7925_16460) - 3687978..3689183 (-) 1206 WP_274344283.1 cytochrome P450 -
  N7925_RS16460 (N7925_16465) vraR 3689325..3689993 (-) 669 WP_217228327.1 response regulator transcription factor Regulator
  N7925_RS16465 (N7925_16470) - 3689990..3691363 (-) 1374 WP_274344284.1 histidine kinase -
  N7925_RS16470 (N7925_16475) - 3691493..3692320 (-) 828 WP_274344285.1 NAD(P)H-binding protein -
  N7925_RS16475 (N7925_16480) - 3692429..3693331 (-) 903 WP_265600358.1 alpha/beta hydrolase -
  N7925_RS16480 (N7925_16485) kynU 3693454..3694698 (-) 1245 WP_274344286.1 kynureninase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23931.76 Da        Isoelectric Point: 4.9479

>NTDB_id=687097 N7925_RS16460 WP_217228327.1 3689325..3689993(-) (vraR) [Streptomyces sp. CA-278952]
MSGTDIRVLIVDDQMMVREGFSVLLNAMPGITVVGEAVDGRQALAQVAALRPDVVLMDIRMPEMNGIEATREIVARDADA
KVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAETPRPPALARIGDLT
ERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=687097 N7925_RS16460 WP_217228327.1 3689325..3689993(-) (vraR) [Streptomyces sp. CA-278952]
ATGAGCGGCACCGACATCCGGGTCCTGATCGTCGACGACCAGATGATGGTCCGCGAGGGCTTCTCGGTCCTGCTCAACGC
GATGCCGGGGATCACCGTCGTGGGCGAGGCGGTCGACGGGCGTCAGGCCCTCGCCCAGGTCGCCGCCCTCCGCCCGGACG
TGGTCCTCATGGACATCCGCATGCCGGAGATGAACGGCATCGAGGCGACCCGCGAAATCGTCGCGCGGGACGCCGACGCG
AAGGTGCTGGTGCTGACGACCTTCGACCTCGACGAATACGTCTACCAGGCGCTGCGGGCCGGGGCCTCGGGCTTCCTCCT
CAAGGACGCGTCCGCCCGGCAGCTCGCCGACGGGGTACGGGTGGTGGCCTCGGGCGAGGCGCTGCTCGCCCCGACGGTGA
CCCGGCGGCTGATCACCGAGTTCTCCAAGCTCGCCGAGACCCCGCGCCCGCCCGCCCTGGCCCGGATCGGCGATCTCACC
GAACGCGAGACGGAGGTGCTCGTCCTGATCGCGCAGGGGCTCTCCAACGCGGAGATCGCCTCGCATCTGATCGTCGCCGA
GTCCACGATCAAGACGCACGTCAGCCGCATCCTGGTGAAGCTGGGGCTGCGGGACCGGACCCAGGCGGCGGTGTTCGCCT
ACGAGGCGCGGCTGGTGACGCCCGGGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.393

96.396

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

42.466

98.649

0.419