Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   KK0981_RS10045 Genome accession   NZ_AP017971
Coordinates   1867242..1868279 (-) Length   345 a.a.
NCBI ID   WP_001842811.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1862242..1873279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS10020 (KK0981_39570) - 1862981..1864312 (-) 1332 WP_000390042.1 hemolysin family protein -
  KK0981_RS10025 (KK0981_39580) endA 1864603..1865427 (-) 825 WP_001036790.1 DNA-entry nuclease EndA Machinery gene
  KK0981_RS10030 (KK0981_39590) - 1865466..1865654 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  KK0981_RS10035 (KK0981_39600) murA 1865647..1866930 (-) 1284 WP_000358028.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KK0981_RS10040 (KK0981_39610) - 1866954..1867184 (-) 231 WP_000250384.1 DUF1146 family protein -
  KK0981_RS10045 (KK0981_39620) sepM 1867242..1868279 (-) 1038 WP_001842811.1 SepM family pheromone-processing serine protease Regulator
  KK0981_RS10050 (KK0981_39630) coaD 1868263..1868751 (-) 489 WP_001280753.1 pantetheine-phosphate adenylyltransferase -
  KK0981_RS10055 (KK0981_39640) rsmD 1868741..1869280 (-) 540 WP_000706959.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KK0981_RS10060 (KK0981_39650) asnA 1869345..1870337 (-) 993 WP_000747990.1 aspartate--ammonia ligase -
  KK0981_RS10070 (KK0981_39660) - 1870449..1871132 (-) 684 WP_001016917.1 Bax inhibitor-1/YccA family protein -
  KK0981_RS10075 (KK0981_39670) - 1871188..1871928 (-) 741 WP_000152678.1 TrmH family RNA methyltransferase -
  KK0981_RS10080 (KK0981_39680) - 1871962..1872240 (+) 279 WP_001174613.1 acylphosphatase -
  KK0981_RS10085 (KK0981_39690) yidC 1872318..1873244 (+) 927 WP_000835941.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37563.65 Da        Isoelectric Point: 5.0724

>NTDB_id=68709 KK0981_RS10045 WP_001842811.1 1867242..1868279(-) (sepM) [Streptococcus pneumoniae strain KK0981]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFLTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=68709 KK0981_RS10045 WP_001842811.1 1867242..1868279(-) (sepM) [Streptococcus pneumoniae strain KK0981]
ATGAAAAAAAAGATTAGATGGCCCTTATACGTCATTGCGGCCTTGATTGTGACTTTCTTGGCATTTGTAGTGCCCTTGCC
TTATTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCCACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGATATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGATTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAAATCATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTTAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.357

99.13

0.588


Multiple sequence alignment