Detailed information NTG0687051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M2J80_RS03425
• Genome accession: NZ_CP097103
• Coordinates: 750992..751858 (-)
• Length: 288 a.a.
• NCBI ID: WP_161892067.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NY11382
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 745992..756858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M2J80_RS03395 (M2J80_03390)	-	746990..748285 (-)	1296	WP_161892069.1	NAD(P)/FAD-dependent oxidoreductase	-
M2J80_RS03400 (M2J80_03395)	-	748370..748543 (-)	174	WP_033744188.1	DUF3094 family protein	-
M2J80_RS03405 (M2J80_03400)	-	748677..749306 (-)	630	WP_009683003.1	DUF1780 domain-containing protein	-
M2J80_RS03410 (M2J80_03405)	-	749438..750121 (+)	684	WP_054903879.1	energy-coupling factor ABC transporter permease	-
M2J80_RS03415 (M2J80_03410)	yacG	750172..750372 (-)	201	WP_009683001.1	DNA gyrase inhibitor YacG	-
M2J80_RS03420 (M2J80_03415)	coaE	750369..750992 (-)	624	WP_161892068.1	dephospho-CoA kinase	-
M2J80_RS03425 (M2J80_03420)	pilD	750992..751858 (-)	867	WP_161892067.1	A24 family peptidase	Machinery gene
M2J80_RS03430 (M2J80_03425)	-	751861..753069 (-)	1209	WP_161892066.1	type II secretion system F family protein	-
M2J80_RS03435 (M2J80_03430)	-	753285..753695 (+)	411	WP_029884908.1	pilin	-
M2J80_RS03445 (M2J80_03440)	-	754004..755293 (+)	1290	WP_270149557.1	integrase arm-type DNA-binding domain-containing protein	-
M2J80_RS03450 (M2J80_03445)	-	755565..756353 (+)	789	WP_141729078.1	hypothetical protein	-
M2J80_RS03455 (M2J80_03450)	-	756423..756683 (+)	261	WP_069943425.1	AlpA family transcriptional regulator	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31744.86 Da
• Isoelectric Point: 8.1500

>NTDB_id=687051 M2J80_RS03425 WP_161892067.1 750992..751858(-) (pilD) [Pseudomonas sp. NY11382]
MTLWTLLAEQPAYFYTLASVLGLLAGSFLNVLVYRLPIMLERQWQREAQQVLGLPTTQHPRFDLCLPASRCPQCAHPIRP
WQNIPVLSYMALRGRCSACKARISPRYPLVEVASALLSLLVAWRFGASAEALLALPLTWCLLALSLIDADHQLLPDVLVL
PMLWLGLIVNAFAVYVPLGSAVWGAVAGYLCLWSVYWLFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLSLLHLHRHALGTAMPFGPYLAIAGWIAVLWGDEIYASYLQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=687051 M2J80_RS03425 WP_161892067.1 750992..751858(-) (pilD) [Pseudomonas sp. NY11382]
ATGACTTTATGGACCTTGCTGGCTGAACAGCCGGCGTACTTCTACACCCTGGCGAGCGTGCTCGGCCTGCTGGCAGGCAG
CTTTCTGAATGTGCTGGTGTACCGCCTGCCGATCATGCTGGAGCGCCAATGGCAGCGTGAAGCGCAGCAGGTTCTGGGGC
TGCCGACTACGCAGCACCCGCGCTTCGACCTGTGCCTGCCCGCTTCGCGCTGCCCGCAGTGCGCACACCCGATTCGCCCG
TGGCAAAACATTCCAGTGCTCAGCTACATGGCCTTGCGTGGGCGCTGCTCTGCCTGCAAGGCCCGCATCAGCCCGCGTTA
CCCACTGGTGGAAGTGGCCAGTGCGCTGCTGTCGCTGCTGGTGGCCTGGCGTTTTGGTGCGTCAGCCGAGGCATTGCTGG
CATTGCCGTTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTACTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAACGCCTTTGCCGTTTATGTACCGCTGGGCAGTGCGGTATGGGGGGCGGTGGC
GGGTTACCTCTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCA
AGCTGATGGCGCTGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGTTGACGCTGCTGCTGTCGTCGGTGGTCGGGGCG
CTGGTGGGCCTGAGCTTGTTGCATTTGCACCGGCACGCACTAGGCACGGCGATGCCGTTTGGCCCTTATCTGGCCATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATATACGCCTCTTACCTGCAACTGCTGGGATACTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.347	96.181	0.503
pilD	Acinetobacter baumannii D1279779	51.661	94.097	0.486
pilD	Acinetobacter nosocomialis M2	50.923	94.097	0.479
pilD	Vibrio campbellii strain DS40M4	48.913	95.833	0.469
pilD	Neisseria gonorrhoeae MS11	49.434	92.014	0.455