Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   KK0981_RS09510 Genome accession   NZ_AP017971
Coordinates   1778194..1779120 (-) Length   308 a.a.
NCBI ID   WP_001291294.1    Uniprot ID   A0A0B7KZ00
Organism   Streptococcus pneumoniae strain KK0981     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1773194..1784120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS09495 (KK0981_38510) treP 1773779..1775743 (-) 1965 WP_000514348.1 PTS system trehalose-specific EIIBC component -
  KK0981_RS09500 (KK0981_38520) treR 1775928..1776638 (+) 711 WP_050201350.1 trehalose operon repressor Regulator
  KK0981_RS09505 - 1776793..1778119 (+) 1327 Protein_1797 transposase -
  KK0981_RS09510 (KK0981_38560) amiF 1778194..1779120 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  KK0981_RS09515 (KK0981_38570) amiE 1779131..1780198 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  KK0981_RS09520 (KK0981_38580) amiD 1780207..1781133 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  KK0981_RS09525 (KK0981_38590) amiC 1781133..1782629 (-) 1497 WP_000759905.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34826.88 Da        Isoelectric Point: 6.6224

>NTDB_id=68698 KK0981_RS09510 WP_001291294.1 1778194..1779120(-) (amiF) [Streptococcus pneumoniae strain KK0981]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQTELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=68698 KK0981_RS09510 WP_001291294.1 1778194..1779120(-) (amiF) [Streptococcus pneumoniae strain KK0981]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAGCCGTCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAACCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.902

99.026

0.851
  amiF Streptococcus thermophilus LMD-9

85.574

99.026

0.847
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844

Multiple sequence alignment