Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   KK0981_RS07820 Genome accession   NZ_AP017971
Coordinates   1463390..1464622 (-) Length   410 a.a.
NCBI ID   WP_000106346.1    Uniprot ID   A0A064C077
Organism   Streptococcus pneumoniae strain KK0981     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1458390..1469622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS07790 (KK0981_35320) - 1458577..1459545 (+) 969 WP_050201372.1 NAD(P)/FAD-dependent oxidoreductase -
  KK0981_RS07795 (KK0981_35330) whiA 1459579..1460490 (-) 912 WP_050201373.1 DNA-binding protein WhiA -
  KK0981_RS07800 (KK0981_35340) - 1460487..1461464 (-) 978 WP_001231095.1 YvcK family protein -
  KK0981_RS07805 (KK0981_35350) rapZ 1461461..1462351 (-) 891 WP_000163031.1 RNase adapter RapZ -
  KK0981_RS07810 (KK0981_35360) - 1462403..1462783 (-) 381 WP_001140412.1 RidA family protein -
  KK0981_RS07815 (KK0981_35370) yihA 1462794..1463381 (-) 588 WP_000422599.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  KK0981_RS07820 (KK0981_35380) clpX 1463390..1464622 (-) 1233 WP_000106346.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KK0981_RS07825 - 1464654..1464824 (-) 171 WP_000442275.1 hypothetical protein -
  KK0981_RS07830 (KK0981_35390) - 1464824..1465330 (-) 507 WP_000162488.1 dihydrofolate reductase -
  KK0981_RS07835 (KK0981_35400) - 1465460..1465978 (-) 519 WP_000229874.1 Dps family protein -
  KK0981_RS07840 (KK0981_35410) lytC 1466475..1467980 (-) 1506 WP_078136106.1 choline binding-anchored murein hydrolase LytC -
  KK0981_RS07845 (KK0981_35420) tpiA 1468018..1468776 (-) 759 WP_000087897.1 triose-phosphate isomerase -
  KK0981_RS07850 (KK0981_35430) - 1468875..1469552 (-) 678 WP_000221619.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45798.35 Da        Isoelectric Point: 4.4550

>NTDB_id=68690 KK0981_RS07820 WP_000106346.1 1463390..1464622(-) (clpX) [Streptococcus pneumoniae strain KK0981]
MSTNRKNDMMVYCSFCGKNQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQVADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKETVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=68690 KK0981_RS07820 WP_000106346.1 1463390..1464622(-) (clpX) [Streptococcus pneumoniae strain KK0981]
ATGTCTACAAATAGAAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAACCAAGAAGAAGTACAAAAAATAAT
TGCTGGCAACAATGCTTTTATTTGTAATGAATGCGTGGAGTTAGCTCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCGGTTTATAACCACTACAAACGCATCAATTTCCACGATACACGCGAAGAGTCAGAAGA
TGTAGATTTGCAGAAGTCAAACATTTTGATGATTGGCCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGATGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGTTGCTGACTTTAACATCGAACGTGCAGAGCGTGGCATTATCTATGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGTGAGAATGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATTGAGGGAACTGTTGCTAGCGTGCCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGATACA
AAAAATATCCTCTTCATCGTGGGTGGTGCTTTTGATGGTATTGAAGAAATTGTCAAACAACGTCTGGGTGAAAAAGTTAT
CGGATTTGGTCAAAACAATAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCTGAAGACATTCAAAAAT
TTGGTATTATCCCTGAGTTGATTGGACGCTTGCCTGTTTTTGCGGCTCTTGAGCAATTGACCGTTGATGACTTGGTTCGC
ATCTTGAAAGAGCCAAGAAATGCCTTGGTGAAACAGTACCAAACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAGATTGCTAATAAGGCAATCGAACGGAAGACAGGGGCGCGTGGACTTCGCTCCATTATCGAAG
AAACCATGCTAGATGTTATGTTTGAGGTGCCGAGTCAGGAAAATGTGAAATTGGTTCGCATCACTAAAGAAACTGTCGAT
GGAACGGATAAACCGATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A064C077

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.585

100

0.866
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.214

98.049

0.561

Multiple sequence alignment