Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGS56_RS02150 Genome accession   NZ_AP022846
Coordinates   429016..429669 (-) Length   217 a.a.
NCBI ID   WP_005694574.1    Uniprot ID   -
Organism   Haemophilus influenzae strain TAMBA230     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 424016..434669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGS56_RS02150 (JPHIA_04010) sxy/tfoX 429016..429669 (-) 654 WP_005694574.1 DNA transformation protein TfoX Regulator
  IGS56_RS02155 (JPHIA_04020) recA 429990..431054 (+) 1065 WP_005654959.1 recombinase RecA Machinery gene
  IGS56_RS02160 (JPHIA_04030) recX 431134..431592 (+) 459 WP_071162958.1 recombination regulator RecX -
  IGS56_RS02165 crcB 431589..431975 (-) 387 WP_005658943.1 fluoride efflux transporter CrcB -
  IGS56_RS02170 (JPHIA_04050) - 431975..432793 (-) 819 WP_071162957.1 Cof-type HAD-IIB family hydrolase -
  IGS56_RS02175 (JPHIA_04060) - 433196..434200 (+) 1005 WP_065250740.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25001.38 Da        Isoelectric Point: 10.0171

>NTDB_id=68665 IGS56_RS02150 WP_005694574.1 429016..429669(-) (sxy/tfoX) [Haemophilus influenzae strain TAMBA230]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILEQKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=68665 IGS56_RS02150 WP_005694574.1 429016..429669(-) (sxy/tfoX) [Haemophilus influenzae strain TAMBA230]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCAGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.539

100

0.995

Multiple sequence alignment