Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M2919_RS06575 Genome accession   NZ_CP097017
Coordinates   1379250..1379753 (+) Length   167 a.a.
NCBI ID   WP_248848444.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT46b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1374250..1384753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2919_RS06560 (M2919_06560) gyrB 1374290..1376245 (+) 1956 WP_248848442.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M2919_RS06565 (M2919_06565) gyrA 1376269..1378737 (+) 2469 WP_248848443.1 DNA gyrase subunit A -
  M2919_RS06570 (M2919_06570) rpsF 1378908..1379207 (+) 300 WP_126762178.1 30S ribosomal protein S6 -
  M2919_RS06575 (M2919_06575) ssbA 1379250..1379753 (+) 504 WP_248848444.1 single-stranded DNA-binding protein Machinery gene
  M2919_RS06580 (M2919_06580) rpsR 1379775..1380014 (+) 240 WP_023606929.1 30S ribosomal protein S18 -
  M2919_RS06585 (M2919_06585) rplI 1380160..1380612 (+) 453 WP_023606930.1 50S ribosomal protein L9 -
  M2919_RS06590 (M2919_06590) dnaB 1380642..1382003 (+) 1362 WP_023606931.1 replicative DNA helicase -
  M2919_RS06595 (M2919_06595) - 1382076..1383695 (-) 1620 WP_023606932.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18516.42 Da        Isoelectric Point: 4.9114

>NTDB_id=686233 M2919_RS06575 WP_248848444.1 1379250..1379753(+) (ssbA) [Vagococcus lutrae strain AT46b]
MINNVVLVGRLTKDPDLRYTANGVAVATFTLAIDRPFTNQSGNREADFINTVIWRKPAETLANYARKGTLIGVVGRIQTR
NYENQQGQRVYVTEVVADSFQFLESKSVNEQRRQGSGTDFGAQPNNNQSFNQSSSSMPQQGMPDFGRDSDPFASSAKIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=686233 M2919_RS06575 WP_248848444.1 1379250..1379753(+) (ssbA) [Vagococcus lutrae strain AT46b]
ATGATTAATAATGTCGTACTAGTAGGTAGATTAACTAAAGATCCAGATTTGCGTTATACAGCAAACGGTGTCGCTGTTGC
AACATTCACATTAGCAATTGATCGTCCATTTACAAATCAAAGCGGTAATCGCGAAGCTGATTTTATCAACACGGTGATTT
GGCGAAAACCAGCAGAAACGCTGGCTAATTACGCACGAAAAGGGACTCTGATTGGTGTGGTAGGACGTATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGTGTCTATGTGACAGAAGTGGTAGCAGACAGTTTCCAATTCTTAGAGTCGAAGTC
AGTTAATGAACAACGACGTCAGGGATCTGGTACAGATTTTGGTGCTCAACCTAATAATAACCAAAGTTTTAATCAATCAT
CATCTTCAATGCCACAACAAGGTATGCCGGATTTTGGTCGTGATTCAGACCCATTCGCATCATCAGCTAAGATTGATATC
TCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.522

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

59.649

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

63.473

0.389
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.371