Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCX78_RS04745 Genome accession   NZ_AP017931
Coordinates   918280..919146 (+) Length   288 a.a.
NCBI ID   WP_025015773.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 913280..924146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04715 (LASAK_00939) - 914136..915047 (+) 912 WP_231952380.1 SGNH/GDSL hydrolase family protein -
  CCX78_RS04720 (LASAK_00940) - 915060..915689 (+) 630 WP_011374699.1 YpmS family protein -
  CCX78_RS04725 (LASAK_00941) - 915700..915924 (+) 225 WP_011374698.1 YozE family protein -
  CCX78_RS04730 (LASAK_00942) lepB 915949..916479 (+) 531 WP_025015770.1 signal peptidase I -
  CCX78_RS04735 (LASAK_00943) ylqF 916611..917462 (+) 852 WP_025015771.1 ribosome biogenesis GTPase YlqF -
  CCX78_RS04740 (LASAK_00944) - 917464..918225 (+) 762 WP_096584940.1 ribonuclease HII -
  CCX78_RS04745 (LASAK_00945) dprA 918280..919146 (+) 867 WP_025015773.1 DNA-processing protein DprA Machinery gene
  CCX78_RS04750 (LASAK_00946) - 919247..920113 (+) 867 WP_096584943.1 NAD(P)H-binding protein -
  CCX78_RS04755 (LASAK_00947) - 920142..920576 (+) 435 WP_011374692.1 Rrf2 family transcriptional regulator -
  CCX78_RS04760 (LASAK_00948) topA 920825..922909 (+) 2085 WP_016265142.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.84 Da        Isoelectric Point: 8.8338

>NTDB_id=68596 CCX78_RS04745 WP_025015773.1 918280..919146(+) (dprA) [Latilactobacillus sakei strain LK-145]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWALSALEIAQITRLPERYWPTFQASFQSTTLQRQCIEHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=68596 CCX78_RS04745 WP_025015773.1 918280..919146(+) (dprA) [Latilactobacillus sakei strain LK-145]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGGCGTTATCGGCGTTAGAAATTGCGCAGATTACGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCAAGTTTTCAAAGTACAACCTTACAACGCCAATGCATCGAACATGAAGTTCGAACGACTTATTTAACC
ATCTTAGATAAAGATTACCCACAACGCTTATTGGAAACCTATTTGCCGCCCGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAACAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGAGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGTTTGTTATTATCTGAATACGCTCTTGGTACACCAGCCCGGCGCTATCAATTTCCAGCCCGTAATA
AAATCATCGCGGGGTTATGTCATAGTTTAATTGTGACGGAAGCACGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTCTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGAGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986

Multiple sequence alignment