Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   CCX78_RS04375 Genome accession   NZ_AP017931
Coordinates   838403..840670 (+) Length   755 a.a.
NCBI ID   WP_096584886.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 833403..845670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04340 (LASAK_00862) - 833562..834650 (+) 1089 WP_011374776.1 CAP-associated domain-containing protein -
  CCX78_RS04345 (LASAK_00863) - 834674..834964 (+) 291 WP_011374775.1 YlbG family protein -
  CCX78_RS04350 (LASAK_00864) rsmD 834969..835523 (+) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CCX78_RS04355 (LASAK_00865) coaD 835536..836033 (+) 498 WP_096584880.1 pantetheine-phosphate adenylyltransferase -
  CCX78_RS04360 (LASAK_00866) - 836035..837081 (+) 1047 WP_096584883.1 SepM family pheromone-processing serine protease -
  CCX78_RS04365 (LASAK_00867) comEA 837153..837860 (+) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  CCX78_RS04370 (LASAK_00868) - 837918..838406 (+) 489 WP_011374770.1 ComE operon protein 2 -
  CCX78_RS04375 (LASAK_00869) comEC 838403..840670 (+) 2268 WP_096584886.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CCX78_RS04380 (LASAK_00870) holA 840667..841695 (+) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  CCX78_RS04385 (LASAK_00871) rpsT 841764..842019 (-) 256 Protein_853 30S ribosomal protein S20 -
  CCX78_RS04390 (LASAK_00872) rpsO 842298..842567 (+) 270 WP_011374766.1 30S ribosomal protein S15 -
  CCX78_RS04395 (LASAK_00873) - 842796..844514 (+) 1719 WP_011374765.1 ribonuclease J -
  CCX78_RS04400 (LASAK_00874) - 844603..845550 (+) 948 WP_011374764.1 hypothetical protein -

Sequence

Protein


Download         Length: 755 a.a.        Molecular weight: 85401.15 Da        Isoelectric Point: 10.0464

>NTDB_id=68594 CCX78_RS04375 WP_096584886.1 838403..840670(+) (comEC) [Latilactobacillus sakei strain LK-145]
MKNNWIYPVICLISLNSLMLGGQSWLTWSLLLLAFVKLISLRQTQITIMTIGLCLVYGGRFWISYHSVTQPQQPVAQYFK
VQPDAIQVAGDSVQLTAIGQQDGQTIKAYYRCQTFAENRRWQQVRHPVLFYGEKDFKRIQGATNQNEFDYARFLAQQKRC
FYQLTLAKKTTFALRRPSSGLDWLHYWRQTCALYLRKLPTALRFHAQTLLLGLREAQVDHYQVVLGHLGIIHLLSLSGLH
VFYLVQVIRWCATYCRIPREWLNCMLFGLLPVYALLVGGTTSISRAIALILSRLLCKQLGIRQSRLDSWSLVLLVNLFWQ
PYLLHSMGGILSYLMAFALIYIGEGSTFKVAYWLSLLSLPVCLRFNYRWHVLTIMMNALVTPIYLPIVLGLVIVASVMLP
VSNLVVNGCEWLLQLIYKGLGLVVQIPHAMITFGKIPLLPLLLIVTVSLLLIDGQAISNQWRKRLKRTLVSLYLASFLAI
HFNPTGRVVMFDIGQGDSLLIQTPFNRHQLLIDTGGRLALPQAAWQRRAQVSRAEKVTVNYLYSQGVDHIDAVALSHQDA
DHIGDLNQILKQIRVDRIICAAGLPQNRQFQRQIRPFLATVQIEPYLAGAAFKVGSQKFNVLAPTKPGKGENSDSLVLQA
QIGGASWLFTGDLEQEGERAIIERYPQLTVDYLKVGHHGSKTASDPTVIKKLHLKGALISTGRENRYGHPHQETLTTLQA
AKVPYWLTAQQGMLTWAYGPGQSEKLQTTIKDSEK

Nucleotide


Download         Length: 2268 bp        

>NTDB_id=68594 CCX78_RS04375 WP_096584886.1 838403..840670(+) (comEC) [Latilactobacillus sakei strain LK-145]
ATGAAAAACAACTGGATTTATCCAGTTATTTGTTTAATCAGTTTAAATAGCTTAATGCTTGGGGGGCAATCTTGGTTAAC
CTGGAGCTTATTATTATTGGCTTTTGTCAAATTAATAAGTCTCAGACAAACTCAGATAACGATTATGACGATCGGCTTAT
GCCTTGTTTACGGGGGCCGCTTTTGGATAAGCTATCATAGTGTGACGCAACCGCAACAACCGGTAGCACAGTACTTTAAA
GTGCAACCCGATGCGATTCAAGTAGCGGGCGATAGTGTCCAATTAACGGCAATCGGCCAACAAGATGGTCAGACTATTAA
GGCTTATTATCGCTGCCAAACGTTCGCCGAGAATCGGCGATGGCAGCAAGTACGACACCCCGTTTTGTTCTATGGGGAAA
AAGATTTTAAACGTATACAGGGTGCTACCAATCAAAATGAGTTTGATTATGCCCGTTTTTTAGCGCAACAGAAGCGCTGC
TTTTACCAACTGACGTTAGCCAAAAAAACAACTTTTGCGCTGAGACGCCCTAGTAGCGGTTTGGATTGGCTACATTATTG
GCGCCAAACGTGTGCACTGTATTTACGTAAGTTACCAACAGCACTACGGTTTCATGCGCAGACGTTACTATTAGGTTTGC
GGGAAGCGCAAGTTGACCATTACCAGGTTGTTTTGGGCCACTTAGGGATTATTCATCTCTTAAGTCTATCAGGGTTGCAC
GTGTTTTATTTAGTGCAAGTCATTCGGTGGTGTGCGACTTATTGCCGCATACCGCGTGAGTGGTTAAACTGTATGTTATT
TGGGCTATTGCCGGTATATGCCTTACTGGTTGGTGGTACGACAAGCATTAGTCGCGCGATTGCGCTTATTTTATCCCGGT
TACTTTGCAAACAGTTGGGCATTCGGCAATCAAGGTTAGATAGTTGGAGTTTAGTATTACTGGTCAATTTATTCTGGCAG
CCTTATTTGCTACATAGTATGGGCGGGATTTTAAGTTATTTGATGGCCTTTGCGCTCATTTATATTGGTGAGGGTAGCAC
TTTTAAAGTTGCTTACTGGCTAAGTTTATTGAGTTTGCCGGTTTGCTTACGCTTTAATTATCGCTGGCATGTGCTGACGA
TAATGATGAATGCCTTGGTAACGCCTATCTATCTGCCAATTGTGCTAGGTTTGGTGATTGTAGCGAGTGTGATGTTACCT
GTTAGCAATCTAGTGGTTAACGGATGTGAGTGGCTGTTACAGTTGATTTACAAAGGCTTAGGACTAGTTGTTCAAATTCC
CCATGCGATGATTACGTTTGGTAAAATACCATTATTACCGTTACTATTGATTGTGACGGTCAGTCTCTTGTTAATCGATG
GCCAGGCAATTAGTAATCAATGGCGTAAACGGCTGAAACGCACATTGGTAAGTTTGTATCTGGCTAGTTTTTTGGCGATT
CATTTTAATCCGACTGGTCGGGTGGTCATGTTTGATATTGGTCAAGGTGATAGTCTGTTGATTCAGACGCCGTTTAACCG
GCATCAGCTTTTAATCGATACTGGTGGTCGCCTAGCGCTACCGCAAGCAGCTTGGCAACGGCGGGCGCAGGTTTCACGAG
CGGAAAAAGTAACGGTTAATTATCTCTATAGCCAAGGAGTAGATCACATTGATGCGGTGGCACTTTCTCATCAGGATGCC
GATCATATTGGTGATTTGAACCAGATTTTAAAACAAATTCGTGTTGATCGAATCATTTGTGCTGCCGGATTACCGCAAAA
TCGGCAATTTCAAAGACAAATTCGACCATTTTTAGCAACGGTTCAGATAGAACCCTATTTAGCCGGGGCCGCTTTTAAAG
TGGGATCGCAAAAATTTAACGTCTTAGCACCGACTAAGCCGGGAAAAGGCGAAAATAGTGATTCGTTAGTCTTACAGGCA
CAAATTGGTGGGGCTAGCTGGCTTTTTACAGGAGATCTAGAACAAGAAGGTGAACGGGCAATTATCGAGCGGTATCCACA
ATTAACCGTCGATTATTTAAAAGTTGGCCATCATGGTAGTAAAACGGCTAGTGACCCCACCGTGATTAAAAAATTGCACT
TAAAAGGCGCATTAATCTCAACCGGCAGAGAGAATCGTTATGGTCATCCGCACCAGGAAACTTTGACGACTTTGCAAGCG
GCCAAAGTGCCTTATTGGCTAACGGCGCAGCAGGGGATGTTGACCTGGGCGTACGGTCCCGGTCAAAGCGAAAAACTGCA
AACAACAATAAAGGATAGTGAAAAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-702)

Competence protein (Competence)

(209-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

99.603

100

0.996

Multiple sequence alignment