Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CCX78_RS04365 Genome accession   NZ_AP017931
Coordinates   837153..837860 (+) Length   235 a.a.
NCBI ID   WP_231952379.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 832153..842860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS04335 (LASAK_00861) - 832364..833551 (+) 1188 WP_011374777.1 FtsW/RodA/SpoVE family cell cycle protein -
  CCX78_RS04340 (LASAK_00862) - 833562..834650 (+) 1089 WP_011374776.1 CAP-associated domain-containing protein -
  CCX78_RS04345 (LASAK_00863) - 834674..834964 (+) 291 WP_011374775.1 YlbG family protein -
  CCX78_RS04350 (LASAK_00864) rsmD 834969..835523 (+) 555 WP_011374774.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CCX78_RS04355 (LASAK_00865) coaD 835536..836033 (+) 498 WP_096584880.1 pantetheine-phosphate adenylyltransferase -
  CCX78_RS04360 (LASAK_00866) - 836035..837081 (+) 1047 WP_096584883.1 SepM family pheromone-processing serine protease -
  CCX78_RS04365 (LASAK_00867) comEA 837153..837860 (+) 708 WP_231952379.1 helix-hairpin-helix domain-containing protein Machinery gene
  CCX78_RS04370 (LASAK_00868) - 837918..838406 (+) 489 WP_011374770.1 ComE operon protein 2 -
  CCX78_RS04375 (LASAK_00869) comEC 838403..840670 (+) 2268 WP_096584886.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CCX78_RS04380 (LASAK_00870) holA 840667..841695 (+) 1029 WP_011374768.1 DNA polymerase III subunit delta -
  CCX78_RS04385 (LASAK_00871) rpsT 841764..842019 (-) 256 Protein_853 30S ribosomal protein S20 -
  CCX78_RS04390 (LASAK_00872) rpsO 842298..842567 (+) 270 WP_011374766.1 30S ribosomal protein S15 -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26146.73 Da        Isoelectric Point: 9.7682

>NTDB_id=68592 CCX78_RS04365 WP_231952379.1 837153..837860(+) (comEA) [Latilactobacillus sakei strain LK-145]
MMWQDYWQRYRRFWWVPCLVLLGIIAGGFYWHQSQQKQKVTQNEQLLATSASKTKPATKKTHQAATKKKGGFVDIKGAVV
YPGIYPITVSETRLFEVLKNAGGPTDAADTKRLNLAQKLTDQLIIYIPKKGEVVTDQELIQAPQQIATTSERTQEQASTG
TSANASSTSDTAKIDLNQADSTQLQTLNGIGPKKAEQIIAYRDEQGKFKQIEDLQKVGGIGPKTFEQLQSQICVN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=68592 CCX78_RS04365 WP_231952379.1 837153..837860(+) (comEA) [Latilactobacillus sakei strain LK-145]
ATGATGTGGCAAGATTATTGGCAGCGATATCGGCGTTTTTGGTGGGTGCCTTGCTTAGTGCTATTGGGGATCATCGCGGG
TGGCTTTTATTGGCATCAATCGCAACAAAAACAAAAAGTAACGCAAAATGAGCAACTGCTAGCAACCAGTGCGTCTAAAA
CAAAACCCGCTACTAAGAAGACACACCAAGCGGCAACCAAGAAAAAAGGCGGTTTTGTCGATATAAAAGGTGCGGTGGTC
TACCCGGGAATTTATCCGATCACAGTCTCTGAAACGCGCTTATTTGAGGTGCTCAAAAATGCAGGTGGTCCGACTGATGC
GGCTGATACCAAGCGGCTTAATTTAGCTCAAAAGTTAACCGATCAACTGATTATTTATATTCCGAAAAAAGGAGAGGTGG
TTACTGATCAAGAACTCATTCAAGCGCCACAACAAATCGCAACGACCAGTGAGCGTACGCAAGAACAGGCATCAACTGGG
ACAAGTGCGAATGCATCGAGCACGAGTGACACTGCTAAAATCGATTTGAATCAGGCTGATAGTACGCAGCTTCAGACCCT
CAATGGCATTGGCCCCAAGAAAGCTGAACAAATAATTGCTTATCGTGATGAACAAGGAAAATTTAAACAGATTGAAGATC
TACAAAAAGTCGGCGGGATTGGTCCGAAGACGTTTGAACAATTGCAATCACAAATTTGTGTGAATTAG

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(73-124)

Helix-hairpin-helix motif (HHH_3)

(172-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Latilactobacillus sakei subsp. sakei 23K

100

100

1
  comEA Lactococcus lactis subsp. cremoris KW2

36.797

98.298

0.362

Multiple sequence alignment