Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ORI33_RS05450 Genome accession   NZ_CP110978
Coordinates   1131125..1132786 (-) Length   553 a.a.
NCBI ID   WP_095885765.1    Uniprot ID   -
Organism   Escherichia coli strain XYEH3934     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126125..1137786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORI33_RS05430 (ORI33_05430) smpB 1129203..1129685 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  ORI33_RS05435 (ORI33_05435) ratA 1129856..1130293 (+) 438 WP_001300750.1 type II toxin-antitoxin system toxin RatA -
  ORI33_RS05440 (ORI33_05440) yfjF 1130283..1130573 (+) 291 WP_001117838.1 RnfH family protein -
  ORI33_RS05445 (ORI33_05445) bamE 1130635..1130976 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  ORI33_RS05450 (ORI33_05450) recN 1131125..1132786 (-) 1662 WP_095885765.1 DNA repair protein RecN Machinery gene
  ORI33_RS05455 (ORI33_05455) nadK 1132872..1133750 (-) 879 WP_001059169.1 NAD(+) kinase -
  ORI33_RS05460 (ORI33_05460) grpE 1133873..1134466 (+) 594 WP_050900260.1 nucleotide exchange factor GrpE -
  ORI33_RS05465 (ORI33_05465) yfjD 1134520..1135806 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  ORI33_RS05470 (ORI33_05470) ypjD 1135827..1136618 (-) 792 WP_095885770.1 cytochrome C assembly family protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61378.35 Da        Isoelectric Point: 5.3374

>NTDB_id=685752 ORI33_RS05450 WP_095885765.1 1131125..1132786(-) (recN) [Escherichia coli strain XYEH3934]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRNGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDHLDLDPNRLFELEQRLSKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=685752 ORI33_RS05450 WP_095885765.1 1131125..1132786(-) (recN) [Escherichia coli strain XYEH3934]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCACAGCGGCATGACCGTAAT
AACCGGTGAAACCGGCGCGGGTAAATCTATTGCGATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGAGCTGAAGCCGACA
TGGTGCGTAATGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCTGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AGTTACTCACCAAACCCGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTGCTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGCGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGCGCCGCCCGTGC
GGAACTATTGCAATACCAATTGAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACTACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTGAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTTCGCCACTACTGCGATCATCTGGATCTCG
ATCCCAACCGACTGTTTGAACTTGAACAGCGCCTCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTACCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTGGAAACCGCGCGCGCATTACACCAACAACGCCAGCAATATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCGCTCTCAATGCCGCATGGGCAGTTTACGATCGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCCGATCGTATTGAATTTCGGGTAACCACCAACCCTGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCCCGCATCGCACTGGCAATCCAGGTCATTACCGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAACTGCTTGCAGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.156

100

0.382
  recN Bacillus subtilis subsp. subtilis str. 168

34.904

100

0.362