Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LEUCM_RS09880 Genome accession   NZ_AP017929
Coordinates   1910318..1910746 (-) Length   142 a.a.
NCBI ID   WP_151384770.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1905318..1915746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS09610 (LACBS_01912) secA 1907034..1909397 (-) 2364 WP_011374203.1 preprotein translocase subunit SecA -
  LEUCM_RS09615 (LACBS_01913) hpf 1909646..1910191 (-) 546 WP_011374202.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  LEUCM_RS09880 (LACBS_01914) comFC 1910318..1910746 (-) 429 WP_151384770.1 ComF family protein Machinery gene
  LEUCM_RS09625 (LACBS_01915) comFA 1910989..1912326 (-) 1338 WP_052039239.1 DEAD/DEAH box helicase Machinery gene
  LEUCM_RS09630 (LACBS_01916) - 1912388..1913053 (+) 666 WP_025016329.1 YigZ family protein -
  LEUCM_RS09635 (LACBS_01917) - 1913080..1914168 (-) 1089 WP_025016330.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16619.07 Da        Isoelectric Point: 10.2048

>NTDB_id=68575 LEUCM_RS09880 WP_151384770.1 1910318..1910746(-) (comFC) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MQLYFQRYKGQGDYQLRLLFERDIRTRFPVKSNVTYVPIPSDEQHQQERGFNPVQGLFETCFPLTSLLKKRPTEKGQAQK
NRAERLASPQFFELVPQKLPHKPQSIIILDDIYTTGRTVWHAQQCLRANYPQATINAITLAR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=68575 LEUCM_RS09880 WP_151384770.1 1910318..1910746(-) (comFC) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGCAGTTATATTTTCAACGTTATAAGGGCCAAGGAGACTATCAATTACGGCTATTATTCGAACGCGACATTCGAACTCG
GTTTCCAGTAAAATCCAATGTAACTTACGTGCCTATTCCATCTGATGAGCAACATCAACAAGAACGGGGCTTTAATCCAG
TCCAAGGCTTATTCGAAACTTGTTTTCCGTTAACATCGTTATTGAAAAAGCGGCCGACAGAGAAGGGTCAAGCACAAAAA
AATCGTGCAGAACGTCTTGCAAGTCCGCAATTTTTTGAATTGGTACCGCAAAAATTACCGCATAAGCCGCAATCGATAAT
AATCTTGGATGATATTTATACGACGGGCCGAACGGTGTGGCATGCACAACAATGTCTGCGTGCTAATTATCCCCAAGCTA
CAATTAATGCGATTACTTTAGCCAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

97.183

100

0.972
  comFC Lactococcus lactis subsp. cremoris KW2

36.62

100

0.366

Multiple sequence alignment