Detailed information NTG0685624

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: OHI04_RS10655
• Genome accession: NZ_CP110849
• Coordinates: 2126868..2127941 (+)
• Length: 357 a.a.
• NCBI ID: WP_039116203.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain VHProbi V60
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2121868..2132941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHI04_RS10630 (OHI04_10635)	pgsA	2121979..2122551 (-)	573	WP_012898490.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
OHI04_RS10635 (OHI04_10640)	-	2122592..2123485 (-)	894	WP_039116195.1	helix-turn-helix domain-containing protein	-
OHI04_RS10640 (OHI04_10645)	yfmH	2123749..2125032 (-)	1284	WP_039116197.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
OHI04_RS10645 (OHI04_10650)	yfmF	2125022..2126308 (-)	1287	WP_174231359.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
OHI04_RS10650 (OHI04_10655)	yaaA	2126506..2126868 (+)	363	WP_012898492.1	S4 domain-containing protein YaaA	-
OHI04_RS10655 (OHI04_10660)	recF	2126868..2127941 (+)	1074	WP_039116203.1	DNA replication/repair protein RecF	Machinery gene
OHI04_RS10660 (OHI04_10665)	-	2128032..2128397 (-)	366	WP_039116206.1	carboxymuconolactone decarboxylase family protein	-
OHI04_RS10665 (OHI04_10670)	-	2128479..2128856 (+)	378	WP_015427093.1	MerR family transcriptional regulator	-
OHI04_RS10670 (OHI04_10675)	-	2128869..2129792 (-)	924	WP_039116750.1	alpha/beta hydrolase	-
OHI04_RS10675 (OHI04_10680)	galE	2129916..2130896 (-)	981	WP_017865083.1	UDP-glucose 4-epimerase GalE	-

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 41242.12 Da
• Isoelectric Point: 6.8652

>NTDB_id=685624 OHI04_RS10655 WP_039116203.1 2126868..2127941(+) (recF) [Lactococcus lactis strain VHProbi V60]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
IPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQE

Nucleotide

• Length: 1074 bp

>NTDB_id=685624 OHI04_RS10655 WP_039116203.1 2126868..2127941(+) (recF) [Lactococcus lactis strain VHProbi V60]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCATCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CCAGTCACGATAAAGAGCTCATTTCTTGGTCGCAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
ATTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTGGTCAAAGGTTCTCCTGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTATTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATCAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	55.278	100	0.557
recF	Bacillus subtilis subsp. subtilis str. 168	46.264	97.479	0.451