Detailed information
Bioinformatically predicted
Overview
| Name | comC | Type | Machinery gene |
| Locus tag | LEUCM_RS03450 | Genome accession | NZ_AP017929 |
| Coordinates | 699559..700248 (-) | Length | 229 a.a. |
| NCBI ID | WP_025015997.1 | Uniprot ID | A0AAF0KA01 |
| Organism | Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 694559..705248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LEUCM_RS03440 (LACBS_00667) | rpoC | 695165..698809 (+) | 3645 | WP_035147345.1 | DNA-directed RNA polymerase subunit beta' | - |
| LEUCM_RS03445 (LACBS_00668) | - | 698983..699555 (+) | 573 | WP_025015998.1 | isochorismatase family protein | - |
| LEUCM_RS03450 | comC | 699559..700248 (-) | 690 | WP_025015997.1 | A24 family peptidase | Machinery gene |
| LEUCM_RS03455 (LACBS_00670) | rpsL | 700529..700942 (+) | 414 | WP_004270179.1 | 30S ribosomal protein S12 | - |
| LEUCM_RS03460 (LACBS_00671) | rpsG | 701032..701502 (+) | 471 | WP_004270185.1 | 30S ribosomal protein S7 | - |
| LEUCM_RS03465 (LACBS_00672) | fusA | 701598..703685 (+) | 2088 | WP_016265721.1 | elongation factor G | - |
| LEUCM_RS03470 (LACBS_00673) | - | 704255..704806 (-) | 552 | WP_025015996.1 | cysteine hydrolase family protein | - |
Sequence
Protein
Download Length: 229 a.a. Molecular weight: 26178.49 Da Isoelectric Point: 7.2085
>NTDB_id=68549 LEUCM_RS03450 WP_025015997.1 699559..700248(-) (comC) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
MLLYLIIFYSGACCASFLTVCAWRLPIEKSIITPRSHCDCCQQPLAWHDLLPLFSYLYLHGHCRTCHAQIKPTFLFSELI
GGLLACFIFSESLSWDLAYLLVILFYISLVDLFYYILYPIPLFASLVPLFYLYWPQNHWLGAIVFCCGLLLTTYWASGFG
FGDVELLTILTLWVGLESVLRILLAACLICILFQGIKKIWPSPKQATRQIPFIPYISMGVVILLLQTPQ
Nucleotide
Download Length: 690 bp
>NTDB_id=68549 LEUCM_RS03450 WP_025015997.1 699559..700248(-) (comC) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTCTTTTATAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGTGATGTCGAGTTACTCACTATCCTGACGCTCTGGGTGGGTCTTGAATCCGTTTTACGAATTCTCTTGGCGGCCTG
TCTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTGATACTACTCCTACAAACACCACAATAA
ATGTTACTTTATTTAATCATCTTTTATAGCGGTGCTTGTTGCGCCTCATTTCTAACCGTTTGCGCCTGGCGCTTACCCAT
CGAAAAGTCCATTATCACACCACGTTCGCACTGCGATTGCTGTCAGCAACCACTGGCTTGGCATGATTTATTACCACTAT
TCAGCTACCTATACTTACATGGCCACTGCCGCACTTGTCATGCTCAGATTAAGCCCACTTTTTTATTCAGCGAACTAATT
GGTGGTCTATTGGCCTGCTTCATTTTTAGCGAATCCCTTTCTTGGGACCTCGCTTATTTACTCGTGATTCTCTTTTATAT
CAGTCTCGTTGACCTCTTCTACTATATTCTCTATCCAATCCCCTTATTCGCATCACTGGTGCCCCTCTTTTATTTGTATT
GGCCACAGAATCATTGGCTAGGAGCCATCGTCTTTTGCTGCGGGCTGTTGCTCACCACTTACTGGGCGTCTGGTTTTGGC
TTTGGTGATGTCGAGTTACTCACTATCCTGACGCTCTGGGTGGGTCTTGAATCCGTTTTACGAATTCTCTTGGCGGCCTG
TCTAATCTGTATTCTATTTCAAGGCATCAAAAAAATCTGGCCATCGCCTAAACAAGCGACGCGCCAGATTCCGTTTATCC
CCTATATATCGATGGGTGTGGTGATACTACTCCTACAAACACCACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comC | Latilactobacillus sakei subsp. sakei 23K |
98.69 |
100 |
0.987 |