Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SLV14N_RS16870 Genome accession   NZ_CP110836
Coordinates   3933328..3934740 (+) Length   470 a.a.
NCBI ID   WP_263269931.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4 4N24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3928328..3939740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14N_RS16850 (SLV14N_003380) - 3928369..3929193 (-) 825 WP_187413045.1 sugar phosphate isomerase/epimerase -
  SLV14N_RS16855 (SLV14N_003381) - 3929412..3930338 (-) 927 WP_208681698.1 Ppx/GppA phosphatase family protein -
  SLV14N_RS16860 (SLV14N_003382) - 3930416..3931279 (+) 864 WP_208681699.1 hypothetical protein -
  SLV14N_RS16865 (SLV14N_003383) - 3931331..3933079 (-) 1749 WP_263269929.1 sigma-70 family RNA polymerase sigma factor -
  SLV14N_RS16870 (SLV14N_003384) radA 3933328..3934740 (+) 1413 WP_263269931.1 DNA repair protein RadA Machinery gene
  SLV14N_RS16875 (SLV14N_003385) disA 3934866..3935990 (+) 1125 WP_026170238.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  SLV14N_RS16880 (SLV14N_003386) - 3936015..3936431 (-) 417 WP_263273189.1 pyridoxamine 5'-phosphate oxidase family protein -
  SLV14N_RS16885 (SLV14N_003387) - 3936600..3937925 (-) 1326 WP_263269933.1 globin domain-containing protein -
  SLV14N_RS16890 (SLV14N_003388) - 3938208..3938909 (+) 702 WP_263269935.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49438.59 Da        Isoelectric Point: 8.0046

>NTDB_id=685446 SLV14N_RS16870 WP_263269931.1 3933328..3934740(+) (radA) [Streptomyces sp. Je 1-4 4N24]
MATRKSSGKERPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAPGRVTTAALPIGQVDGRQATARSTGVPE
LDRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAV
LGHLDTVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLH
FEGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGIVGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLSEAARLGFTHALVPSDPGKIPDGMRVLEVADVGQALSVLPKRVRREAPQEEGARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=685446 SLV14N_RS16870 WP_263269931.1 3933328..3934740(+) (radA) [Streptomyces sp. Je 1-4 4N24]
ATGGCAACGCGTAAATCGTCGGGCAAGGAGCGTCCCTCCTACCGCTGCACCGAATGCGGCTGGACCACCGCGAAATGGCT
CGGCCGCTGTCCCGAGTGCCAGGCATGGGGCACGGTCGAGGAGTTCGGCGGCGCCCCCGCGGTGCGCACGACCGCGCCCG
GCCGCGTCACCACCGCCGCCCTGCCCATCGGCCAGGTCGACGGCAGGCAGGCCACCGCCCGCTCCACGGGCGTGCCCGAG
CTGGACCGCGTCCTGGGCGGCGGGCTGGTCCCCGGCGCCGTCGCCCTGCTGGCCGGCGAGCCCGGTGTGGGCAAATCCAC
CCTGCTGCTGGACGTCGCCGCCAAGGCCGCCTCCGACGCCCACCGCACGCTGTATGTCACCGGCGAGGAATCCGCGAGCC
AGGTACGGCTGCGCGCCGACCGCATCGGCGCCCTCGACGACCATCTGTATCTGGCCGCCGAAACCGACCTGTCGGCGGTG
CTCGGCCATCTGGACACGGTCAAGCCGTCGCTGCTGATCCTCGACTCGGTGCAGACCGTCGCCTCCCCCGAGATCGAAGG
GGCGCCCGGCGGTATGGCCCAGGTCCGCGAAGTGGCCGGCGCACTGATCCGGGCCTCCAAGGAACGCGGTATGGCCACCC
TCCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCCGGACCGCGCCTGCTGGAGCATCTCGTCGATGTCGTCCTCCAC
TTCGAGGGCGACCGGCACGCCCGGCTCCGTCTGGTCCGCGGCGTCAAGAACCGCTACGGCACCACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAAGGCATCGTCGGCCTCGCCGACCCCTCCGGCCTCTTTTTGACCCGCCGCGCCGAACCGGTGC
CCGGCACCTGCCTGACCGTGACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTGACCGTCGACTCCCAG
ATCCCCTCCCCCCGGCGCACCACCTCCGGCCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTCCTGGAACAGCGCGG
CCGGATCAGCTCCCTGGGCAAACGCGACATCTACAGCGCAACGGTCGGCGGCGTGAAGCTGACCGAGCCCGCCGCGGACC
TCGCCGTGGCCCTCGCACTGGCCAGCGCGGCCAGTGACACCCCCCTGCCGAAGAACCTGGTCGCCATCGGCGAAGTGGGG
CTCGCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCCGGCTGTCCGAGGCGGCCCGGCTCGGCTTCACCCACGCCCT
CGTCCCCTCCGACCCCGGCAAGATCCCCGACGGGATGCGGGTGCTGGAGGTCGCCGACGTCGGACAGGCACTCAGCGTGC
TGCCCAAGCGGGTCCGCCGGGAGGCCCCACAGGAAGAGGGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)

AAA domain (AAA_25)

(79-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

43.237

95.957

0.415
  radA Streptococcus pneumoniae D39

43.237

95.957

0.415
  radA Streptococcus pneumoniae R6

43.237

95.957

0.415
  radA Streptococcus pneumoniae Rx1

43.237

95.957

0.415
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.794

95.957

0.411
  radA Streptococcus mitis SK321

44.626

91.064

0.406
  radA Streptococcus mitis NCTC 12261

44.626

91.064

0.406