Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OOL18_RS05015 Genome accession   NZ_CP110664
Coordinates   1066081..1067460 (+) Length   459 a.a.
NCBI ID   WP_017357656.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1061081..1072460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS04985 yacG 1061360..1061548 (-) 189 WP_005597388.1 DNA gyrase inhibitor YacG -
  OOL18_RS04990 coaE 1061530..1062168 (-) 639 WP_005612207.1 dephospho-CoA kinase -
  OOL18_RS04995 - 1062190..1062828 (-) 639 WP_005604550.1 prepilin peptidase -
  OOL18_RS05000 pilC 1062855..1064057 (-) 1203 WP_012263006.1 type II secretion system F family protein Machinery gene
  OOL18_RS05005 pilB 1064041..1065435 (-) 1395 WP_005601209.1 GspE/PulE family protein Machinery gene
  OOL18_RS05010 pilA 1065453..1065899 (-) 447 WP_215577633.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OOL18_RS05015 radA/sms 1066081..1067460 (+) 1380 WP_017357656.1 DNA repair protein RadA Machinery gene
  OOL18_RS05020 - 1067504..1067737 (-) 234 WP_005597399.1 YgjV family protein -
  OOL18_RS05025 folA 1067864..1068352 (-) 489 WP_005597400.1 type 3 dihydrofolate reductase -
  OOL18_RS05030 proB 1068439..1069530 (+) 1092 WP_005601213.1 glutamate 5-kinase -
  OOL18_RS05035 - 1069543..1070319 (+) 777 WP_005597402.1 TSUP family transporter -
  OOL18_RS05040 - 1070364..1071017 (+) 654 WP_103034748.1 IS1595 family transposase -
  OOL18_RS05045 nth 1071040..1071672 (+) 633 WP_005597404.1 endonuclease III -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49646.18 Da        Isoelectric Point: 7.9094

>NTDB_id=685223 OOL18_RS05015 WP_017357656.1 1066081..1067460(+) (radA/sms) [Actinobacillus pleuropneumoniae strain AP_123]
MAKAPKTAYVCNDCGAEYSRWVGQCKECKSWNTVSEIRLISSKEATKSDRFSGYAGETSGKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKDLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKIMVIDSIQVMHLADIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHCIDASI
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDEQTPGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRALPQDLVVFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKPIKGMEVFTVKKLSDALDILGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=685223 OOL18_RS05015 WP_017357656.1 1066081..1067460(+) (radA/sms) [Actinobacillus pleuropneumoniae strain AP_123]
ATGGCTAAAGCACCAAAAACAGCTTATGTATGTAATGATTGCGGCGCGGAATATTCTCGTTGGGTGGGGCAATGCAAAGA
ATGTAAGTCTTGGAATACCGTGAGTGAAATCAGACTTATCTCGAGTAAAGAAGCAACAAAAAGCGACCGCTTCAGCGGAT
ATGCCGGCGAAACCTCCGGTAAAGTTCAAACTTTATCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGCAGCGGCTTT
AATGAATTGGATCGCGTACTGGGCGGCGGTGTCGTGCCGGGTTCGGCAATTTTAATCGGCGGCCATCCCGGTGCCGGTAA
ATCCACTCTGCTTTTACAAGTAATGTGCGGTTTGTCTAAAGATTTGCCGACCCTTTACGTGACTGGTGAAGAATCCCTAC
AACAAGTGGCGATGCGAGCGAATCGTTTAGGCTTACCGACCGACAATCTCAAGATGCTTTCAGAAACTTCGGTCGAGCAT
ATTTGTAATATCGCCGACCAAGAAAAGCCGAAAATTATGGTAATCGACTCAATTCAGGTCATGCACCTTGCCGATATTCA
ATCTTCTCCCGGTAGCGTTTCGCAAGTGCGGGAATGCGCTTCGTTTCTGACTCGCTATGCAAAAACCCGCCAAGTAGCGA
TTATTATGGTCGGACACGTCACCAAAGACGGGACACTTGCCGGCCCGAAAGTGTTGGAACACTGTATTGACGCCTCAATT
TTACTGGAAGGCGAATCGGACTCTCGATTCCGTACCTTACGCAGCCAGAAAAACCGTTTCGGTGCGGTCAATGAATTGGG
CGTATTTGCCATGACCGAACAAGGCTTACGAGAAGTAAAAAACCCTTCCGCGATTTTCCTCAGCCGTAGCGATGAACAAA
CGCCGGGCAGTTCCGTGATGGTGCTTTGGGAAGGAACCCGTCCGTTATTAGTCGAAATTCAAGCGTTGGTTGATCATTCG
ATGTTGGCTAATCCTCGCCGTGTCGCCGTAGGTTTAGATCACAACCGTTTATCGCTCTTACTTGCGGTGTTACATCGCCA
CGGCGGTTTGCAAATGTCGGATCAAGATGTGTTCGTCAATGTGGTCGGCGGGGTAAAAGTGACCGAGACCAGTGCCGATC
TCGCCCTAATTTTGGCGTTAATTTCCAGTTTTAGAAATCGTGCGTTACCGCAAGATTTGGTCGTATTCGGCGAGGTGGGA
TTAGCCGGAGAAATTCGTCCGGTACCGAGCGGTCAAGAACGTATCAGCGAAGCGGCGAAGCACGGTTTTAAACGTGCGAT
TATTCCTCACGGCAACGCACCTAAAAAACCGATTAAAGGTATGGAAGTCTTTACCGTTAAGAAACTAAGCGACGCACTAG
ATATTCTCGGCAATCTCTAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

48.14

99.564

0.479
  radA Streptococcus mitis NCTC 12261

44.493

98.911

0.44
  radA Streptococcus mitis SK321

44.273

98.911

0.438
  radA Streptococcus pneumoniae Rx1

45.581

93.682

0.427
  radA Streptococcus pneumoniae D39

45.581

93.682

0.427
  radA Streptococcus pneumoniae R6

45.581

93.682

0.427
  radA Streptococcus pneumoniae TIGR4

45.581

93.682

0.427