Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OOL18_RS05010 Genome accession   NZ_CP110664
Coordinates   1065453..1065899 (-) Length   148 a.a.
NCBI ID   WP_215577633.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060453..1070899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS04985 yacG 1061360..1061548 (-) 189 WP_005597388.1 DNA gyrase inhibitor YacG -
  OOL18_RS04990 coaE 1061530..1062168 (-) 639 WP_005612207.1 dephospho-CoA kinase -
  OOL18_RS04995 - 1062190..1062828 (-) 639 WP_005604550.1 prepilin peptidase -
  OOL18_RS05000 pilC 1062855..1064057 (-) 1203 WP_012263006.1 type II secretion system F family protein Machinery gene
  OOL18_RS05005 pilB 1064041..1065435 (-) 1395 WP_005601209.1 GspE/PulE family protein Machinery gene
  OOL18_RS05010 pilA 1065453..1065899 (-) 447 WP_215577633.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  OOL18_RS05015 radA/sms 1066081..1067460 (+) 1380 WP_017357656.1 DNA repair protein RadA Machinery gene
  OOL18_RS05020 - 1067504..1067737 (-) 234 WP_005597399.1 YgjV family protein -
  OOL18_RS05025 folA 1067864..1068352 (-) 489 WP_005597400.1 type 3 dihydrofolate reductase -
  OOL18_RS05030 proB 1068439..1069530 (+) 1092 WP_005601213.1 glutamate 5-kinase -
  OOL18_RS05035 - 1069543..1070319 (+) 777 WP_005597402.1 TSUP family transporter -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15962.35 Da        Isoelectric Point: 7.6257

>NTDB_id=685222 OOL18_RS05010 WP_215577633.1 1065453..1065899(-) (pilA) [Actinobacillus pleuropneumoniae strain AP_123]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKITELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=685222 OOL18_RS05010 WP_215577633.1 1065453..1065899(-) (pilA) [Actinobacillus pleuropneumoniae strain AP_123]
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATAACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(13-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

68.919

100

0.689
  pilA Haemophilus influenzae 86-028NP

55.102

99.324

0.547
  pilA Haemophilus influenzae Rd KW20

53.061

99.324

0.527