Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   OM087_RS20320 Genome accession   NZ_CP110511
Coordinates   4218556..4219293 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain ws5-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4213556..4224293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM087_RS20290 (OM087_20210) yfiL 4213714..4214079 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  OM087_RS20295 (OM087_20215) aroF 4214289..4215359 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  OM087_RS20300 (OM087_20220) tyrA 4215370..4216491 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  OM087_RS20305 (OM087_20225) pheA 4216534..4217694 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  OM087_RS20310 (OM087_20230) pheL 4217793..4217840 (-) 48 WP_010723158.1 phe operon leader peptide -
  OM087_RS20315 (OM087_20235) raiA 4217944..4218285 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  OM087_RS20320 (OM087_20240) comL 4218556..4219293 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  OM087_RS20325 (OM087_20245) rluD 4219428..4220408 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  OM087_RS20330 (OM087_20250) yfiH 4220405..4221136 (+) 732 WP_115724310.1 purine nucleoside phosphorylase YfiH -
  OM087_RS20335 (OM087_20255) clpC 4221266..4223839 (+) 2574 WP_115724309.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=685036 OM087_RS20320 WP_000197686.1 4218556..4219293(-) (comL) [Escherichia coli strain ws5-3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=685036 OM087_RS20320 WP_000197686.1 4218556..4219293(-) (comL) [Escherichia coli strain ws5-3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376