Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   JP49775_RS08010 Genome accession   NZ_AP017922
Coordinates   1629099..1629785 (-) Length   228 a.a.
NCBI ID   WP_072434739.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1624099..1634785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS07990 (JP02758_1520) rpsT 1625013..1625264 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  JP49775_RS07995 (JP02758_1521) holA 1625309..1626283 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  JP49775_RS08000 (JP02758_1522) comEC 1626340..1628541 (-) 2202 WP_029549646.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JP49775_RS08005 (JP02758_1523) - 1628546..1629007 (-) 462 WP_000439693.1 ComE operon protein 2 -
  JP49775_RS08010 (JP02758_1524) comEA 1629099..1629785 (-) 687 WP_072434739.1 ComEA family DNA-binding protein Machinery gene
  JP49775_RS08015 (JP02758_1525) - 1629825..1630541 (-) 717 WP_029549644.1 class I SAM-dependent DNA methyltransferase -
  JP49775_RS08020 (JP02758_1526) rsfS 1630544..1630897 (-) 354 WP_001088020.1 ribosome silencing factor -
  JP49775_RS08025 (JP02758_1527) yqeK 1630898..1631482 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  JP49775_RS08030 (JP02758_1528) nadD 1631472..1632041 (-) 570 WP_029549643.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  JP49775_RS08035 (JP02758_1529) yhbY 1632044..1632334 (-) 291 WP_000955232.1 ribosome assembly RNA-binding protein YhbY -
  JP49775_RS08040 (JP02758_1530) aroE 1632338..1633144 (-) 807 WP_029549642.1 shikimate dehydrogenase -
  JP49775_RS08045 (JP02758_1531) yqeH 1633158..1634258 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25756.47 Da        Isoelectric Point: 9.5275

>NTDB_id=68499 JP49775_RS08010 WP_072434739.1 1629099..1629785(-) (comEA) [Staphylococcus aureus strain JP02758]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLIDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNPNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=68499 JP49775_RS08010 WP_072434739.1 1629099..1629785(-) (comEA) [Staphylococcus aureus strain JP02758]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAATAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACCCAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment