Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   EFK13_RS16250 Genome accession   NZ_CP096889
Coordinates   3164821..3165465 (-) Length   214 a.a.
NCBI ID   WP_064816492.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3159821..3170465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS16215 (EFK13_16215) - 3161010..3161441 (+) 432 WP_129507725.1 Na(+)/H(+) antiporter subunit B -
  EFK13_RS16220 (EFK13_16220) - 3161441..3161782 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  EFK13_RS16225 (EFK13_16225) - 3161775..3163256 (+) 1482 WP_129507724.1 Na+/H+ antiporter subunit D -
  EFK13_RS16230 (EFK13_16230) - 3163262..3163738 (+) 477 WP_129507723.1 Na+/H+ antiporter subunit E -
  EFK13_RS16235 (EFK13_16235) - 3163738..3164022 (+) 285 WP_129507722.1 Na(+)/H(+) antiporter subunit F1 -
  EFK13_RS16240 (EFK13_16240) mnhG 3164006..3164380 (+) 375 WP_129507721.1 monovalent cation/H(+) antiporter subunit G -
  EFK13_RS16245 (EFK13_16245) - 3164420..3164800 (-) 381 WP_064816560.1 hotdog fold thioesterase -
  EFK13_RS16250 (EFK13_16250) comA 3164821..3165465 (-) 645 WP_064816492.1 two-component system response regulator ComA Regulator
  EFK13_RS16255 (EFK13_16255) comP 3165546..3167843 (-) 2298 WP_129507720.1 histidine kinase Regulator
  EFK13_RS16260 (EFK13_16260) comX 3167851..3168012 (-) 162 WP_105955475.1 competence pheromone ComX -
  EFK13_RS16265 (EFK13_16265) - 3168027..3168887 (-) 861 WP_129507719.1 polyprenyl synthetase family protein -
  EFK13_RS16270 (EFK13_16270) degQ 3169072..3169212 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  EFK13_RS16275 (EFK13_16275) - 3169437..3169514 (+) 78 Protein_3146 hypothetical protein -
  EFK13_RS16280 (EFK13_16280) - 3169673..3170041 (+) 369 WP_129507718.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24114.48 Da        Isoelectric Point: 4.6801

>NTDB_id=684899 EFK13_RS16250 WP_064816492.1 3164821..3165465(-) (comA) [Bacillus cabrialesii strain TE3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=684899 EFK13_RS16250 WP_064816492.1 3164821..3165465(-) (comA) [Bacillus cabrialesii strain TE3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCACGACTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAAATCACACAATACATATACCACGTACTCAACGGTGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGATCCATTGAATA
CAGCCTGACATCGATCTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGATGGTGTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.533

100

0.995