Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EFK13_RS14255 Genome accession   NZ_CP096889
Coordinates   2773094..2773840 (-) Length   248 a.a.
NCBI ID   WP_129508019.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2768094..2778840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS14230 (EFK13_14230) mreC 2768510..2769382 (-) 873 WP_129508023.1 rod shape-determining protein MreC -
  EFK13_RS14235 (EFK13_14235) mreB 2769413..2770426 (-) 1014 WP_010330269.1 cell shape-determining protein MreB -
  EFK13_RS14240 (EFK13_14240) radC 2770518..2771213 (-) 696 WP_129508022.1 DNA repair protein RadC -
  EFK13_RS14245 (EFK13_14245) - 2771250..2771819 (-) 570 WP_129508021.1 Maf family nucleotide pyrophosphatase -
  EFK13_RS14250 (EFK13_14250) - 2771971..2772969 (-) 999 WP_129508020.1 SPOR domain-containing protein -
  EFK13_RS14255 (EFK13_14255) comC 2773094..2773840 (-) 747 WP_129508019.1 A24 family peptidase Machinery gene
  EFK13_RS14260 (EFK13_14260) - 2773984..2775276 (-) 1293 WP_129508018.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EFK13_RS14265 (EFK13_14265) valS 2775336..2777978 (-) 2643 WP_129508066.1 valine--tRNA ligase -
  EFK13_RS14270 (EFK13_14270) - 2778425..2778616 (+) 192 WP_064814421.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26458.00 Da        Isoelectric Point: 9.6190

>NTDB_id=684894 EFK13_RS14255 WP_129508019.1 2773094..2773840(-) (comC) [Bacillus cabrialesii strain TE3]
MLIILFIFGLILGSFYYTAGCRIPLHISIITPRSACSFCRQALTPAELIPILSFLFQKGKCKSCGQRISFMYPAAELVTA
CLFAAAGIRFGSSPELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLSLI
AAITRGGIGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKREPLPFAPAIGAGSMLAYFYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=684894 EFK13_RS14255 WP_129508019.1 2773094..2773840(-) (comC) [Bacillus cabrialesii strain TE3]
ATGCTTATCATTCTTTTTATCTTCGGGCTGATCCTTGGTTCATTTTATTATACGGCGGGTTGCCGCATCCCCTTACATAT
ATCCATTATCACGCCCCGTTCGGCTTGCTCGTTTTGCCGGCAAGCATTAACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAAGGCAAATGTAAAAGCTGCGGGCAGAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCGGGAATACGCTTTGGCTCATCTCCAGAACTGTTTCCCGCTGTCGTTTTTATCTCTCTTCTCAT
TATTGTTGCAGTAACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCTG
CGAGATTGATTTCTCCTCTTGATTCTTGGTATGCCGGCTTGTTAGGTGCGGCCGCTGGATTTCTTTTCCTGTCCCTCATT
GCCGCAATCACCCGTGGAGGAATAGGGGGAGGTGATATTAAATTATTTGCGGTGATTGGTTTTGTGCTTGGGGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCCGTTTTGATAGGCGCATTGTATGGAGCGGCAGCCGTCCTGACTGGAAGACTCGCTA
AAAGGGAACCGCTTCCCTTTGCCCCCGCAATTGGGGCAGGGAGCATGTTAGCCTATTTTTACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

92.742

100

0.927