Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   EFK13_RS12570 Genome accession   NZ_CP096889
Coordinates   2475853..2476923 (-) Length   356 a.a.
NCBI ID   WP_129505172.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2470853..2481923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS12525 (EFK13_12525) tapA 2471329..2472090 (-) 762 WP_129505181.1 amyloid fiber anchoring/assembly protein TapA -
  EFK13_RS12530 (EFK13_12530) - 2472364..2472690 (+) 327 WP_129505180.1 YqzG/YhdC family protein -
  EFK13_RS12535 (EFK13_12535) - 2472732..2472911 (-) 180 WP_129505179.1 YqzE family protein -
  EFK13_RS12540 (EFK13_12540) comGG 2472983..2473357 (-) 375 WP_129505178.1 competence type IV pilus minor pilin ComGG Machinery gene
  EFK13_RS12545 (EFK13_12545) comGF 2473358..2473741 (-) 384 WP_129505177.1 competence type IV pilus minor pilin ComGF Machinery gene
  EFK13_RS12550 (EFK13_12550) comGE 2473767..2474114 (-) 348 WP_129505176.1 competence type IV pilus minor pilin ComGE Machinery gene
  EFK13_RS12555 (EFK13_12555) comGD 2474098..2474529 (-) 432 WP_129505175.1 competence type IV pilus minor pilin ComGD Machinery gene
  EFK13_RS12560 (EFK13_12560) comGC 2474519..2474815 (-) 297 WP_129505174.1 comG operon protein ComGC Machinery gene
  EFK13_RS12565 (EFK13_12565) comGB 2474829..2475866 (-) 1038 WP_129505173.1 competence type IV pilus assembly protein ComGB Machinery gene
  EFK13_RS12570 (EFK13_12570) comGA 2475853..2476923 (-) 1071 WP_129505172.1 competence protein ComGA Machinery gene
  EFK13_RS12575 (EFK13_12575) - 2477137..2477547 (-) 411 WP_129505171.1 CBS domain-containing protein -
  EFK13_RS12580 (EFK13_12580) corA 2477610..2478563 (-) 954 WP_129505170.1 magnesium transporter CorA -
  EFK13_RS12585 (EFK13_12585) - 2478709..2480037 (+) 1329 WP_129505169.1 hemolysin family protein -
  EFK13_RS12590 (EFK13_12590) - 2480091..2480930 (-) 840 WP_129505168.1 STAS domain-containing protein -
  EFK13_RS12600 (EFK13_12600) mgsR 2481154..2481531 (-) 378 WP_129505167.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40474.65 Da        Isoelectric Point: 9.0259

>NTDB_id=684886 EFK13_RS12570 WP_129505172.1 2475853..2476923(-) (comGA) [Bacillus cabrialesii strain TE3]
MDSIEKISRTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQSGSLT
LKLEEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDRLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTLIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=684886 EFK13_RS12570 WP_129505172.1 2475853..2476923(-) (comGA) [Bacillus cabrialesii strain TE3]
TTGGATTCAATAGAAAAGATAAGCAGAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGTGACGCCATCATTCATTTTCGGGTTGATCATGCTTTGTTGAAAAAAAGAAACATGAAAAAAGAAGAGTGTG
TAAGACTGATTTCCCATTTTAAATTTCTCTCAGCGATGGATATAGGGGAAAGACGAAAGCCGCAAAGTGGTTCGCTTACG
TTAAAACTTGAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTTCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATACAATATCCCTTCGATAGATAGACTGTCATTATTTCCGAAGACAGGAGCCACCTTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGACCGACTGGTTCAGGGAAGACCACCACATTATATTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAGACACGGGACGAGGATGTTCTACAAGTGCA
GGTGAATGAAAAAGCCGGTGTGACATATTCCGCGGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAAATCAGAGACGCGGAAACCGCGAAAATTGCTGTGCGGGCAGCGATGACGGGGCATCTGGTGCTGACGAGCCTTCAT
ACGAGAGATGCGAAGGGTGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCGAACAGACTCTCATTGC
AATAGCTGCTCAGCGTTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGTTGTTCATCGGTGTATTGCCGCCAGTCAC
GGAATACCAGAAGAGCAAGCGTTTATGAGCTCCTTTACGGAAAAAATCTTCAGCAATGCATTCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTGCGTCAAATTATCAGAAAAGGAATTGCGCTTGGCTACTTGACGACAAACAACTA
CGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.91

100

0.969
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362