Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   EFK13_RS12325 Genome accession   NZ_CP096889
Coordinates   2437382..2439112 (-) Length   576 a.a.
NCBI ID   WP_129505205.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2432382..2444112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS12300 (EFK13_12300) - 2432950..2433084 (+) 135 WP_003236876.1 hypothetical protein -
  EFK13_RS12305 (EFK13_12305) - 2433157..2434275 (+) 1119 WP_129505208.1 NADH-dependent flavin oxidoreductase -
  EFK13_RS12310 (EFK13_12310) - 2434525..2434704 (-) 180 WP_129505207.1 hypothetical protein -
  EFK13_RS12315 (EFK13_12315) spo0A 2434848..2435651 (-) 804 WP_129505206.1 sporulation transcription factor Spo0A Regulator
  EFK13_RS12320 (EFK13_12320) spoIVB 2435927..2437207 (-) 1281 WP_119996498.1 SpoIVB peptidase -
  EFK13_RS12325 (EFK13_12325) recN 2437382..2439112 (-) 1731 WP_129505205.1 DNA repair protein RecN Machinery gene
  EFK13_RS12330 (EFK13_12330) argR 2439148..2439597 (-) 450 WP_014114358.1 arginine repressor ArgR -
  EFK13_RS12335 (EFK13_12335) - 2439693..2440538 (-) 846 WP_064814168.1 TlyA family RNA methyltransferase -
  EFK13_RS12340 (EFK13_12340) dxs 2440535..2442436 (-) 1902 WP_103746357.1 1-deoxy-D-xylulose-5-phosphate synthase -
  EFK13_RS12345 (EFK13_12345) - 2442616..2443506 (-) 891 WP_129505204.1 polyprenyl synthetase family protein -
  EFK13_RS12350 (EFK13_12350) - 2443496..2443750 (-) 255 WP_129505203.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64448.13 Da        Isoelectric Point: 4.7340

>NTDB_id=684877 EFK13_RS12325 WP_129505205.1 2437382..2439112(-) (recN) [Bacillus cabrialesii strain TE3]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLDSGHPVFGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYVKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEMKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKAWSKKLADEIHRELKSLYMEKSTFDTEFKV
RTASHNEEAPIVNGQPVQLSEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTHVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=684877 EFK13_RS12325 WP_129505205.1 2437382..2439112(-) (recN) [Bacillus cabrialesii strain TE3]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGAGGGCTTACGGTATT
AACAGGAGAAACCGGAGCCGGCAAATCGATCATCATAGACGCTATTTCTCTTTTAGTCGGCGGCCGCGGATCATCTGAAT
TTGTCAGATATGGAGAAGCAAAAGCCGAGCTTGAAGGGCTGTTTCTATTGGACAGCGGCCATCCCGTTTTTGGTGTGTGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGAGATATCAGCACGAGTGGAAAAAGCGTCTGCCG
TGTTAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTTCTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCACTCCAA
GCGTACCAAGAAGGGTACCAGCGGTATGTGAAGCTGCTTAAAAAGCTAAAGCAGCTTTCTGAAAGCGAACAGGAGATGGC
CCATCGTCTGGATCTTATTCAATTTCAGCTGGAAGAAATTGAATCTGCCAAGCTAGAGCTTAACGAAGACGAACAGCTCC
AAGAAGAACGCCAGCAAATTTCAAATTTTGAGAAGATCTATGAATCGCTGCAAAATGCATATAACGCGCTGCGCAGCGAG
CAGGGCGGACTGGACTGGGTCGGAATGGCATCTGCGCAGCTTGAAGATATATCTGATATTAATGAACCGCTGAAAAAACT
GTCTGAAAGTGTTTCGAACTCATACTATCTTTTGGAAGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGTCTCAATGAAATGAAACAGCTGAAACGAAAATACGGTGCAACTGTT
GAGGACATTTTGGAATACGCTTCAAAGATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCATCTTCAAAGCTT
GAAAAAGGAGCTTGACTCAGTCGGCAAGGATGTCGCAGTGGAAGCGGCAAATGTTTCGCAAATCCGGAAAGCGTGGTCAA
AAAAGCTGGCTGATGAAATTCATCGGGAGTTAAAAAGCCTGTACATGGAAAAATCAACGTTTGATACGGAGTTTAAGGTC
AGAACAGCGTCTCACAATGAGGAGGCACCGATTGTAAACGGCCAGCCTGTTCAGCTGTCTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAACCGCTGAAATCCCTTTCGAAAGTCGCTTCCGGTGGAGAGCTGTCACGGG
TAATGCTTGCCATAAAAAGCATTTTTTCCTCTCAACAGGATGTGACGTCGATTATTTTCGATGAGGTTGATACCGGTGTG
AGCGGCAGAGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTGTGTATTACACATTT
GCCTCAGGTGGCGGCCATGGCAGATACGCATCTTTATATTGCGAAGGAATTAAAAGACGGCAGAACGACGACACATGTCA
AGCCGTTATCTAAGCAGGAAAAGGTGGCGGAAATCGGGCGTATGATTGCCGGAGTCGAAGTAACAGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACGGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.743

100

0.977