Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   EFK13_RS12315 Genome accession   NZ_CP096889
Coordinates   2434848..2435651 (-) Length   267 a.a.
NCBI ID   WP_129505206.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2429848..2440651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS12285 (EFK13_12285) - 2430872..2431609 (-) 738 WP_129505210.1 glycerophosphodiester phosphodiesterase -
  EFK13_RS12290 (EFK13_12290) - 2431687..2432307 (-) 621 WP_129505209.1 N-acetylmuramoyl-L-alanine amidase -
  EFK13_RS12295 (EFK13_12295) - 2432327..2432623 (-) 297 WP_129505301.1 lipoprotein -
  EFK13_RS12300 (EFK13_12300) - 2432950..2433084 (+) 135 WP_003236876.1 hypothetical protein -
  EFK13_RS12305 (EFK13_12305) - 2433157..2434275 (+) 1119 WP_129505208.1 NADH-dependent flavin oxidoreductase -
  EFK13_RS12310 (EFK13_12310) - 2434525..2434704 (-) 180 WP_129505207.1 hypothetical protein -
  EFK13_RS12315 (EFK13_12315) spo0A 2434848..2435651 (-) 804 WP_129505206.1 sporulation transcription factor Spo0A Regulator
  EFK13_RS12320 (EFK13_12320) spoIVB 2435927..2437207 (-) 1281 WP_119996498.1 SpoIVB peptidase -
  EFK13_RS12325 (EFK13_12325) recN 2437382..2439112 (-) 1731 WP_129505205.1 DNA repair protein RecN Machinery gene
  EFK13_RS12330 (EFK13_12330) argR 2439148..2439597 (-) 450 WP_014114358.1 arginine repressor ArgR -
  EFK13_RS12335 (EFK13_12335) - 2439693..2440538 (-) 846 WP_064814168.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29661.21 Da        Isoelectric Point: 6.6113

>NTDB_id=684876 EFK13_RS12315 WP_129505206.1 2434848..2435651(-) (spo0A) [Bacillus cabrialesii strain TE3]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPVPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=684876 EFK13_RS12315 WP_129505206.1 2434848..2435651(-) (spo0A) [Bacillus cabrialesii strain TE3]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATTGAAGGACAGGA
AGACATGGAAGTGATCGGTGTTGCTTATAACGGACAGGAGTGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTGGACGGACTTGCGGTTTTAGAGCGGCTGAGGGAATCGGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAAGAGGATGTCACGAAAAAAGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAGCCGTTCGATATGGAAAACCTTGTCGGACATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCCTCGCAAAGCAGCATTATACGCAGCAGCCAGCCTGTACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCGGCACATATAAAAGGCTATCTCTATTTGCGTGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTTGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCGATTGAAGTGGCGTGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGCTATACCGTC
AGCATGACAAAAGCTAAACCGACCAATAGTGAGTTCATTGCGATGGTCGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996