Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JP49775_RS04455 Genome accession   NZ_AP017922
Coordinates   929212..930198 (+) Length   328 a.a.
NCBI ID   WP_029549756.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP02758     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 924212..935198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JP49775_RS04430 (JP02758_0838) opp4B 924426..925388 (+) 963 WP_029549758.1 oligopeptide ABC transporter permease -
  JP49775_RS04435 (JP02758_0839) opp4C 925400..926281 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  JP49775_RS04440 (JP02758_0840) trpS 926323..927312 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  JP49775_RS04445 (JP02758_0841) spxA 927606..928001 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JP49775_RS04450 (JP02758_0842) mecA 928372..929091 (+) 720 WP_001217731.1 adaptor protein MecA -
  JP49775_RS04455 (JP02758_0843) coiA 929212..930198 (+) 987 WP_029549756.1 competence protein CoiA Machinery gene
  JP49775_RS04460 (JP02758_0844) pepF 930246..932054 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  JP49775_RS04465 (JP02758_0845) yjbH 932514..933320 (-) 807 WP_029549755.1 protease adaptor protein YjbH -
  JP49775_RS04470 (JP02758_0846) - 933343..933708 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  JP49775_RS04475 (JP02758_0847) - 933812..934404 (-) 593 Protein_866 CYTH domain-containing protein -
  JP49775_RS04480 (JP02758_0848) - 934590..934937 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38859.38 Da        Isoelectric Point: 9.3322

>NTDB_id=68484 JP49775_RS04455 WP_029549756.1 929212..930198(+) (coiA) [Staphylococcus aureus strain JP02758]
MLVALNEEKERVLATTALRKTQYFCPVCGKEVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPISYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKRNVKMSELFNETPCDYHVVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGESILVSDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=68484 JP49775_RS04455 WP_029549756.1 929212..930198(+) (coiA) [Staphylococcus aureus strain JP02758]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGGAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTTCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGGGGGCACAAATATGTCGCTGA
AAAAAGGAATGTCAAAATGAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGTTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAGAAAGCATATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCGATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

95.122

100

0.951
  coiA Staphylococcus aureus MW2

95.122

100

0.951

Multiple sequence alignment