Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OM089_RS10405 Genome accession   NZ_CP110368
Coordinates   2219973..2220587 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain 18083286     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2214973..2225587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS10380 - 2215430..2215693 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  OM089_RS10385 topA 2215784..2218390 (+) 2607 WP_034069888.1 type I DNA topoisomerase -
  OM089_RS10390 - 2218497..2219015 (+) 519 WP_003091199.1 DUF6586 family protein -
  OM089_RS10395 - 2219221..2219454 (+) 234 WP_003109483.1 hypothetical protein -
  OM089_RS10400 sulA 2219476..2219961 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  OM089_RS10405 dinR/lexA 2219973..2220587 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  OM089_RS10410 psrA 2220819..2221520 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  OM089_RS10415 nagZ 2221722..2222720 (+) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  OM089_RS10420 - 2222732..2223469 (+) 738 WP_003162486.1 S-methyl-5'-thioinosine phosphorylase -
  OM089_RS10425 - 2223515..2224144 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=684812 OM089_RS10405 WP_003091196.1 2219973..2220587(-) (dinR/lexA) [Pseudomonas aeruginosa strain 18083286]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=684812 OM089_RS10405 WP_003091196.1 2219973..2220587(-) (dinR/lexA) [Pseudomonas aeruginosa strain 18083286]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387