Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   M1J35_RS10540 Genome accession   NZ_CP096886
Coordinates   2051147..2052115 (+) Length   322 a.a.
NCBI ID   WP_254653586.1    Uniprot ID   -
Organism   Rossellomorea sp. KS-H15a     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2046147..2057115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1J35_RS10515 (M1J35_10515) - 2046202..2046381 (+) 180 WP_034763424.1 YjzC family protein -
  M1J35_RS10520 (M1J35_10520) clpB 2046503..2049094 (+) 2592 WP_254653582.1 ATP-dependent chaperone ClpB -
  M1J35_RS10525 (M1J35_10525) - 2049128..2049295 (-) 168 WP_263497663.1 YjzD family protein -
  M1J35_RS10530 (M1J35_10530) - 2049560..2050303 (+) 744 WP_254653584.1 hydrolase -
  M1J35_RS10535 (M1J35_10535) - 2050326..2051045 (+) 720 WP_254653585.1 hypothetical protein -
  M1J35_RS10540 (M1J35_10540) med 2051147..2052115 (+) 969 WP_254653586.1 BMP family ABC transporter substrate-binding protein Regulator
  M1J35_RS10545 (M1J35_10545) comZ 2052112..2052300 (+) 189 WP_034763435.1 ComZ family protein Regulator
  M1J35_RS10550 (M1J35_10550) - 2052517..2053449 (+) 933 WP_254653587.1 beta-ketoacyl-ACP synthase III -
  M1J35_RS10555 (M1J35_10555) fabF 2053501..2054745 (+) 1245 WP_224520457.1 beta-ketoacyl-ACP synthase II -
  M1J35_RS10560 (M1J35_10560) - 2054742..2054954 (-) 213 WP_254653588.1 hypothetical protein -
  M1J35_RS10565 (M1J35_10565) - 2055509..2056300 (+) 792 WP_254653589.1 DUF2268 domain-containing protein -
  M1J35_RS10570 (M1J35_10570) - 2056437..2056646 (+) 210 WP_034763443.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35884.04 Da        Isoelectric Point: 4.4447

>NTDB_id=684811 M1J35_RS10540 WP_254653586.1 2051147..2052115(+) (med) [Rossellomorea sp. KS-H15a]
MNKKWYMFFLIVFLVGLSGCSAGNSEEIEKVGLLVPEAVNDGVWGTKGYKGLLKIQSDYHADVFYKEGMKNDTSIKQAVE
EFDDKDVTLVFGHGSEYADVFNDLSGEHPNMHFVSFNGHATEKNTTSLQFKGYAMGFFGGMTAAFHSKTKKIGVIAAFEW
QPEVQGFIDGAKYQNSETEVNVEYTNHWDDQERALNELDTLLNEDIDVVYPAGDGYNVAVIEKLKGKGLYAIGYVSDQSD
LGESTVLTSTVQQADKLYAVVAERFAHDELESGNLEFDFEDGVISMGKFSPVIPKDFQSEMKQHIKDYIDTGKLPNGKES
KQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=684811 M1J35_RS10540 WP_254653586.1 2051147..2052115(+) (med) [Rossellomorea sp. KS-H15a]
ATGAATAAGAAATGGTACATGTTTTTCCTGATTGTATTCCTGGTCGGACTAAGTGGTTGTTCAGCAGGGAACAGCGAAGA
GATAGAAAAGGTTGGTTTACTTGTTCCGGAAGCAGTGAATGATGGAGTTTGGGGAACAAAAGGTTACAAAGGATTACTAA
AAATACAATCCGATTATCATGCAGACGTGTTCTATAAAGAGGGAATGAAGAATGATACATCAATCAAGCAGGCAGTAGAG
GAATTTGATGATAAGGATGTCACCTTAGTATTTGGACATGGAAGTGAGTATGCGGATGTCTTTAACGACTTGTCAGGAGA
GCATCCCAATATGCATTTCGTCAGCTTTAACGGGCATGCCACGGAGAAAAATACGACAAGCCTACAGTTCAAGGGATACG
CAATGGGCTTTTTCGGAGGAATGACAGCAGCATTTCACTCTAAAACGAAGAAGATCGGTGTGATTGCGGCCTTCGAGTGG
CAGCCGGAAGTTCAAGGGTTTATAGATGGAGCGAAGTATCAAAACAGTGAGACAGAGGTTAACGTAGAGTACACCAATCA
TTGGGACGATCAAGAGAGGGCCCTTAACGAGTTGGACACTTTACTAAACGAGGATATCGATGTTGTGTATCCTGCAGGTG
ACGGCTATAATGTAGCTGTAATCGAAAAGCTTAAGGGAAAAGGACTGTATGCCATAGGGTACGTATCCGATCAATCCGAT
CTCGGGGAATCAACGGTCCTGACAAGCACAGTTCAACAGGCAGATAAGTTGTATGCAGTAGTAGCCGAGAGGTTCGCCCA
TGATGAGCTGGAGTCAGGTAACCTGGAATTCGATTTTGAAGACGGTGTGATCTCCATGGGGAAATTCAGTCCAGTCATTC
CAAAAGATTTTCAATCTGAAATGAAGCAACATATCAAGGACTATATTGATACCGGCAAATTGCCGAATGGAAAGGAATCG
AAGCAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

55.38

98.137

0.543