Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LFL98_RS08115 Genome accession   NZ_CP110365
Coordinates   1538983..1540008 (+) Length   341 a.a.
NCBI ID   WP_014476730.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1533983..1545008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS08080 (LFL98_08085) ylbE 1534283..1534522 (+) 240 WP_003232231.1 YlbE-like family protein -
  LFL98_RS08085 (LFL98_08090) ylbF 1534638..1535087 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  LFL98_RS08090 (LFL98_08095) ylbG 1535142..1535414 (+) 273 WP_009967171.1 YlbG family protein -
  LFL98_RS08095 (LFL98_08100) rsmD 1535737..1536291 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LFL98_RS08100 (LFL98_08105) coaD 1536296..1536781 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  LFL98_RS08105 (LFL98_08110) spoVV 1536792..1538018 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  LFL98_RS08110 (LFL98_08115) ylbK 1538199..1538981 (+) 783 WP_003232221.1 patatin family protein -
  LFL98_RS08115 (LFL98_08120) sepM 1538983..1540008 (+) 1026 WP_014476730.1 protease DdcP Regulator
  LFL98_RS08120 (LFL98_08125) ylbM 1540025..1541272 (-) 1248 WP_128992804.1 nucleotidyltransferase -
  LFL98_RS08125 (LFL98_08130) - 1541269..1541454 (-) 186 WP_003232215.1 hypothetical protein -
  LFL98_RS08130 (LFL98_08135) ylbN 1541482..1542000 (+) 519 WP_110109387.1 DUF177 domain-containing protein -
  LFL98_RS08135 (LFL98_08140) rpmF 1542022..1542201 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  LFL98_RS08140 (LFL98_08145) gerR 1542347..1542928 (+) 582 WP_003232210.1 sporulation specific transcriptional regulator GerR -
  LFL98_RS08145 (LFL98_08150) ylbP 1542985..1543467 (-) 483 WP_003244940.1 N-acetyltransferase -
  LFL98_RS08150 (LFL98_08155) - 1543627..1544523 (+) 897 WP_163131330.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37652.22 Da        Isoelectric Point: 5.9932

>NTDB_id=684698 LFL98_RS08115 WP_014476730.1 1538983..1540008(+) (sepM) [Bacillus subtilis strain HY2-62]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=684698 LFL98_RS08115 WP_014476730.1 1538983..1540008(+) (sepM) [Bacillus subtilis strain HY2-62]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGTTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATTTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402