Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LFL98_RS08085 Genome accession   NZ_CP110365
Coordinates   1534638..1535087 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain HY2-62     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1529638..1540087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS08045 (LFL98_08050) ctaE 1529654..1530277 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  LFL98_RS08050 (LFL98_08055) ctaF 1530280..1530612 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  LFL98_RS08055 (LFL98_08060) ctaG 1530640..1531533 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  LFL98_RS08060 (LFL98_08065) ylbA 1531565..1531927 (-) 363 WP_003232238.1 YugN family protein -
  LFL98_RS08065 (LFL98_08070) ylbB 1532067..1532513 (+) 447 WP_277737126.1 CBS domain-containing protein -
  LFL98_RS08070 (LFL98_08075) ylbC 1532597..1533637 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  LFL98_RS08075 (LFL98_08080) ylbD 1533869..1534267 (+) 399 WP_003232233.1 YlbD family protein -
  LFL98_RS08080 (LFL98_08085) ylbE 1534283..1534522 (+) 240 WP_003232231.1 YlbE-like family protein -
  LFL98_RS08085 (LFL98_08090) ylbF 1534638..1535087 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  LFL98_RS08090 (LFL98_08095) ylbG 1535142..1535414 (+) 273 WP_009967171.1 YlbG family protein -
  LFL98_RS08095 (LFL98_08100) rsmD 1535737..1536291 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LFL98_RS08100 (LFL98_08105) coaD 1536296..1536781 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  LFL98_RS08105 (LFL98_08110) spoVV 1536792..1538018 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  LFL98_RS08110 (LFL98_08115) ylbK 1538199..1538981 (+) 783 WP_003232221.1 patatin family protein -
  LFL98_RS08115 (LFL98_08120) sepM 1538983..1540008 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=684697 LFL98_RS08085 WP_003221370.1 1534638..1535087(+) (ylbF) [Bacillus subtilis strain HY2-62]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=684697 LFL98_RS08085 WP_003221370.1 1534638..1535087(+) (ylbF) [Bacillus subtilis strain HY2-62]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1