Detailed information NTG0684454

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MYB54_RS06690
• Genome accession: NZ_CP096821
• Coordinates: 1501448..1502293 (+)
• Length: 281 a.a.
• NCBI ID: WP_119871904.1
• Uniprot ID: -
• Organism: Pectobacterium sp. 21LCBS03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1496448..1507293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MYB54_RS06660 (MYB54_06660)	gspI	1496840..1497205 (+)	366	WP_039284733.1	type II secretion system minor pseudopilin GspI	-
MYB54_RS06665 (MYB54_06665)	gspJ	1497205..1497855 (+)	651	WP_072010021.1	type II secretion system minor pseudopilin GspJ	-
MYB54_RS06670 (MYB54_06670)	gspK	1497852..1498838 (+)	987	WP_039509462.1	type II secretion system minor pseudopilin GspK	-
MYB54_RS06675 (MYB54_06675)	gspL	1498835..1500112 (+)	1278	WP_248721702.1	type II secretion system protein GspL	-
MYB54_RS06680 (MYB54_06680)	gspM	1500109..1500603 (+)	495	WP_248721703.1	type II secretion system protein GspM	-
MYB54_RS06685 (MYB54_06685)	-	1500593..1501339 (+)	747	WP_119871903.1	type II secretion system protein N	-
MYB54_RS06690 (MYB54_06690)	pilD	1501448..1502293 (+)	846	WP_119871904.1	A24 family peptidase	Machinery gene
MYB54_RS06695 (MYB54_06695)	ypdK	1502454..1502528 (-)	75	WP_099606229.1	membrane protein YpdK	-
MYB54_RS06700 (MYB54_06700)	-	1502886..1503911 (-)	1026	WP_014916091.1	LLM class flavin-dependent oxidoreductase	-
MYB54_RS06705 (MYB54_06705)	-	1504221..1505285 (+)	1065	WP_014916090.1	ABC transporter substrate-binding protein	-
MYB54_RS06710 (MYB54_06710)	-	1505282..1506301 (+)	1020	WP_014916089.1	iron ABC transporter permease	-
MYB54_RS06715 (MYB54_06715)	-	1506303..1507073 (+)	771	WP_014916088.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31466.46 Da
• Isoelectric Point: 6.4557

>NTDB_id=684454 MYB54_RS06690 WP_119871904.1 1501448..1502293(+) (pilD) [Pectobacterium sp. 21LCBS03]
MDDLREFAQLFPAWWFGSLGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELETGMADSDPDKRYNLWWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEVITMLAFLTAGLLWLPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWIGLLFNLSETFVPLNDAVVGAMAGYLSLWLLYWVFKYVTGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLVWRGLRKEDTAKPLAFGPWLAMGGVFGVIMNGLNL

Nucleotide

• Length: 846 bp

>NTDB_id=684454 MYB54_RS06690 WP_119871904.1 1501448..1502293(+) (pilD) [Pectobacterium sp. 21LCBS03]
GTGGACGATTTAAGGGAATTTGCACAGCTGTTTCCGGCATGGTGGTTTGGATCGCTGGGCGTGCTGGGATTGATTGTTGG
CAGTTTTTTGAACGTGGTGATTTACCGCTTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGAGCTTGAAACGG
GCATGGCCGATTCCGATCCTGATAAGCGCTACAACCTGTGGTGGCCGCCTTCGTCGTGCCCACACTGCCAGCAGGCTATT
GCGGTGAAGGATAACATCCCGCTATTCAGTTGGCTGTGGTTGCGTGGCCGCTCCCGCTGCTGTCATCAATCAGTATCTGT
GCAATATCCGTTAGTGGAAGTCATCACCATGCTGGCTTTTCTGACGGCAGGTTTACTCTGGCTACCCGGTATGGCGCTGT
GGGGGGCGTTGATTCTGCTGTCATTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGCTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATAGGGCTGCTGTTTAATCTGTCGGAGACATTTGTCCCATTGAATGATGCCGTCGTCGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTGCTTTATTGGGTATTCAAATACGTAACGGGCAAAGAGGCGCTGGGGTACGGTG
ATTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTTCTGGTGGCGGCGCTGAGC
GGGTTGGTCGTGACTCTCGTCTGGCGCGGATTGCGTAAAGAGGATACGGCTAAACCGCTGGCCTTTGGCCCCTGGCTGGC
AATGGGCGGGGTATTTGGCGTGATAATGAACGGATTGAATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.185	96.441	0.484
pilD	Neisseria gonorrhoeae MS11	47.126	92.883	0.438
pilD	Vibrio campbellii strain DS40M4	44.981	95.73	0.431
pilD	Acinetobacter baumannii D1279779	41.758	97.153	0.406
pilD	Acinetobacter nosocomialis M2	41.392	97.153	0.402