Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   PALA45_RS25700 Genome accession   NZ_CP110351
Coordinates   5492159..5495002 (+) Length   947 a.a.
NCBI ID   WP_012613540.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA45     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5487159..5500002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA45_RS25675 (PALA45_05102) pchC 5487467..5488222 (+) 756 WP_003106952.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA45_RS25680 (PALA45_05103) pchB 5488222..5488527 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  PALA45_RS25685 (PALA45_05104) pchA 5488524..5489954 (+) 1431 WP_012613541.1 isochorismate synthase PchA -
  PALA45_RS25690 (PALA45_05105) ssb 5490043..5490540 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  PALA45_RS25695 (PALA45_05106) - 5490557..5491945 (-) 1389 WP_003103910.1 MFS transporter -
  PALA45_RS25700 (PALA45_05107) uvrA 5492159..5495002 (+) 2844 WP_012613540.1 excinuclease ABC subunit UvrA Machinery gene
  PALA45_RS25705 (PALA45_05108) bfr 5495074..5495538 (-) 465 WP_003093668.1 bacterioferritin -
  PALA45_RS25710 (PALA45_05109) katA 5495669..5497117 (-) 1449 WP_003103909.1 catalase KatA -
  PALA45_RS25715 (PALA45_05110) rplQ 5497399..5497788 (-) 390 WP_003093672.1 50S ribosomal protein L17 -
  PALA45_RS25720 (PALA45_05111) - 5497832..5498833 (-) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  PALA45_RS25725 (PALA45_05112) rpsD 5498856..5499476 (-) 621 WP_003093678.1 30S ribosomal protein S4 -
  PALA45_RS25730 (PALA45_05113) rpsK 5499493..5499882 (-) 390 WP_003093689.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 947 a.a.        Molecular weight: 104733.33 Da        Isoelectric Point: 6.4808

>NTDB_id=684408 PALA45_RS25700 WP_012613540.1 5492159..5495002(+) (uvrA) [Pseudomonas aeruginosa strain PALA45]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYF
QMLGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELA
KFLSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYL
TLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVV
DIGPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCI
TGVSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGV
PEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEARE
FFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRL
RDHGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2844 bp        

>NTDB_id=684408 PALA45_RS25700 WP_012613540.1 5492159..5495002(+) (uvrA) [Pseudomonas aeruginosa strain PALA45]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTGCTTTATGCCCGCGTCGGTACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGATAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTAGCACCGATGGACGAGGAC
GAGGACGAGGATGTCGAGGAGATCATCTTCTCGGCGCGCTTCGCCTGCCCGGTCTGCGGCCACTCTATCAGCGAGCTGGA
ACCCAAGCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGTCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACG
CGCGCCGGGTGGTCAACGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTC
CAGATGCTCGGTTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAACACCAGAA
GGTGGTGCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGTTCGC
ACCCCTTCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAGCTGGCC
AAGTTCCTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGA
CCGGACGCTGCCGGCGATCACCGCGATGCCGGTCGGCGAAGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCC
GTGGCGAGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTG
ACCCTCGACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCT
GGTGGGAGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAGCGCCTGCTCGGCACCCTCA
CCCACCTGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTTGTC
GACATCGGTCCGGGCGCCGGCGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGA
CTCGCTGACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGC
TGCTGAAGCTGAAAGGTGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATC
ACCGGGGTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGC
GACTACCCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCC
CGATCGGTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTTTCCGGCGTG
CCGGAGGCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGG
CGACGGCGTGATCAAGGTGGAGATGCACTTCCTGCCGGATATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACA
ACCGCGAGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAGGTGCTGGAGATGACCATCGAGGAAGCCCGCGAG
TTCTTCGACGCCGTCCCCGCCCTGGCGCGCAAGCTGCAGACGCTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCA
GAGCGCGACCACCCTCTCGGGCGGCGAGGCGCAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGATACCGGCAAGA
CCCTGTACATCCTCGACGAACCGACCACCGGCCTGCATTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTG
CGCGACCACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGG
CCCCGAGGGCGGCTCCAAGGGTGGCCAGATCATCGCCAACGGCACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACA
CCGGCCACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(293-401)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.113

100

0.572
  uvrA Streptococcus pneumoniae TIGR4

57.113

100

0.572
  uvrA Streptococcus pneumoniae D39

57.113

100

0.572